Detailed information of TA system    

insolicoBioinformatically predicted

Overview

TA module


Type II Classification (family/domain) pmenTA/darT(toxin)
Location 1176430..1178183 Replicon chromosome
Accession NZ_AP024238
Organism Rhodoferax sp. MIZ03

Toxin (Protein)


Gene name pmenT Uniprot ID -
Locus tag LDN84_RS05495 Protein ID WP_223909555.1
Coordinates 1177539..1178183 (-) Length 215 a.a.

Antitoxin (Protein)


Gene name pmenA Uniprot ID -
Locus tag LDN84_RS05490 Protein ID WP_223909552.1
Coordinates 1176430..1177539 (-) Length 370 a.a.

Genomic Context

LDN84_RS05485LDN84_RS05490LDN84_RS05495LDN84_RS05500LDN84_RS05505LDN84_RS05510
Location: 1174985..1176214 (1230 bp)
Type: Others
Protein ID: WP_223909549.1
Location: 1176430..1177539 (1110 bp)
Type: Antitoxin
Protein ID: WP_223909552.1
Location: 1177539..1178183 (645 bp)
Type: Toxin
Protein ID: WP_223909555.1
Location: 1178180..1178752 (573 bp)
Type: Others
Protein ID: WP_223909559.1
Location: 1178991..1181219 (2229 bp)
Type: Others
Protein ID: WP_223909561.1
Location: 1181244..1182005 (762 bp)
Type: Others
Protein ID: WP_223909564.1
ToxinAntitoxinOther genes
Loading, please wait
Locus tag
Coordinates
Strand
Size (bp)
Protein ID
Product
Description
LDN84_RS05485 (MIZ03_1172)1174985..1176214+1230WP_223909549.1alpha/beta fold hydrolase-
LDN84_RS05490 (MIZ03_1174)1176430..1177539-1110WP_223909552.1macro domain-containing proteinAntitoxin
LDN84_RS05495 (MIZ03_1175)1177539..1178183-645WP_223909555.1DUF4433 domain-containing proteinToxin
LDN84_RS05500 (MIZ03_1176)1178180..1178752-573WP_223909559.1DarT ssDNA thymidine ADP-ribosyltransferase family protein-
LDN84_RS05505 (MIZ03_1178)1178991..1181219-2229WP_223909561.1malate synthase G-
LDN84_RS05510 (MIZ03_1179)1181244..1182005-762WP_223909564.1haloacid dehalogenase type II-

Associated MGEs

Loading, please wait
MGE
detail
Similar
MGEs
Relative
position
MGE Type
Cargo ARG
Virulence gene
Coordinates
Length (bp)
No matching records found


Relative position:
(1) inside: TA loci is completely located inside the MGE;
(2) overlap: TA loci is partially overlapped with the MGE;
(3) flank: The TA loci is located in the 5 kb flanking regions of MGE.


Domains

Predicted by InterproScan

Toxin

ssDNA thymidine ADP-ribosyltransferase, DarT

(14-214)

Antitoxin

Macro domain

(18-128)


Sequences

Toxin        


Download         Length: 215 a.a.        Molecular weight: 24582.07 Da        Isoelectric Point: 7.6313

>T38175 WP_223909555.1 NZ_AP024238:c1178183-1177539 [Rhodoferax sp. MIZ03]
MIYKNLNPEKALIWRIIHRDNLPWVLAHGLHCGNGVQQAPNWVHIGNSELIDKRAHHTVPLPPGGVLNDYVPFYFTPFSV
MMRNIRSGRGGVQQRDNDEIVILVSSLHHVAQQGLPFLFTDMHAYYRWATYYNDLAHLDKVDWALLQARDFKRDENDPAK
FERYQAEALIHRHCPVSGLIGMVCHSEEGKMQAQTQVAAQGLNLPVHARPGWYF

Download         Length: 645 bp

>T38175 NZ_AP024238:c1178183-1177539 [Rhodoferax sp. MIZ03]
ATGATCTACAAAAACCTCAATCCCGAGAAAGCGCTGATCTGGCGCATCATCCATCGCGACAACCTGCCATGGGTGCTGGC
GCACGGCCTGCACTGCGGCAACGGTGTTCAACAAGCGCCGAACTGGGTACACATTGGTAATTCGGAGTTGATTGACAAGC
GGGCTCACCATACCGTGCCGCTGCCACCAGGTGGCGTGCTGAACGACTATGTGCCGTTTTACTTCACGCCCTTCTCGGTG
ATGATGCGCAACATACGCTCTGGGCGTGGTGGTGTGCAACAGCGGGACAACGATGAAATTGTGATTCTGGTATCGAGCCT
GCATCATGTGGCGCAGCAAGGGCTGCCGTTTTTGTTCACCGACATGCACGCCTACTACCGCTGGGCCACTTACTACAACG
ATCTGGCTCACCTGGACAAAGTGGATTGGGCGCTACTGCAAGCGAGGGACTTCAAACGTGACGAAAACGACCCCGCCAAA
TTCGAGCGCTACCAAGCCGAAGCGCTGATCCATCGGCACTGCCCGGTGTCCGGGTTGATTGGGATGGTTTGCCATTCAGA
AGAAGGCAAAATGCAGGCTCAAACGCAAGTTGCGGCTCAAGGGCTGAATTTGCCGGTTCATGCACGTCCGGGGTGGTATT
TCTGA

Antitoxin


Download         Length: 370 a.a.        Molecular weight: 41636.01 Da        Isoelectric Point: 6.7503

>AT38175 WP_223909552.1 NZ_AP024238:c1177539-1176430 [Rhodoferax sp. MIZ03]
MLNFTTGNLLEARAQALVNTVNTVGVMGKGIALMFKERFADNYRQYAAACKSGQVKTGHMFVTKTTELDGPRWIINFPTK
QHWRSPSQLEWVVEGLQDLRRFLIDNEVKSVAIPPLGAGNGGLDWNHVRPEIERALGDLTEIDITVFEPTRQYQNVAKRA
GIEKLTPARALIAELVRRYWVLGMECSLLEIQKLAWFLERSIERFMPGNNPLALQFEANRYGPYANRLDKLLDKLDGSYL
HCEKRIADADKLDVIWFDDGRKDLVQAYLQSEAKAYLPALEATAELIDGFESPFGMELLATVDWLLTREQVTPTVPALRE
ALKRWPIPGAAQRKTHLFHDQAISIALERLTTSPLCNAVPPQPICVLPA

Download         Length: 1110 bp

>AT38175 NZ_AP024238:c1177539-1176430 [Rhodoferax sp. MIZ03]
ATGCTCAATTTCACAACAGGTAATTTGCTGGAAGCCCGCGCCCAGGCGCTGGTGAACACGGTGAACACCGTCGGCGTGAT
GGGCAAAGGCATTGCGCTGATGTTCAAAGAGCGCTTTGCTGACAACTATCGCCAATACGCCGCTGCTTGCAAAAGCGGAC
AAGTCAAAACCGGCCACATGTTTGTCACCAAGACGACCGAGCTGGACGGCCCGCGCTGGATCATTAACTTTCCCACCAAG
CAGCATTGGCGCTCACCCTCCCAACTGGAATGGGTGGTTGAAGGTTTGCAGGATCTGCGCCGCTTTCTCATCGACAACGA
GGTCAAGTCCGTTGCCATTCCCCCCCTCGGTGCGGGCAATGGCGGGCTGGACTGGAACCACGTCAGGCCGGAGATCGAGC
GTGCATTGGGCGATTTGACTGAGATCGACATCACCGTGTTTGAGCCAACCAGGCAATACCAGAATGTGGCCAAGCGCGCC
GGTATTGAAAAACTGACCCCAGCCCGCGCACTGATTGCCGAGTTGGTCCGCCGCTACTGGGTGCTGGGCATGGAATGCAG
CTTGCTGGAAATCCAAAAGCTGGCCTGGTTTCTGGAGCGCTCCATTGAACGCTTCATGCCAGGCAACAATCCGCTGGCAC
TTCAATTCGAAGCCAACCGGTATGGCCCCTATGCCAACCGCCTGGACAAGCTTTTGGACAAACTCGACGGCAGCTACCTG
CATTGCGAAAAGCGCATTGCCGATGCCGACAAACTTGACGTGATCTGGTTTGATGATGGTCGCAAAGACTTGGTACAAGC
CTATTTGCAGAGCGAAGCCAAGGCTTACCTCCCGGCACTGGAGGCCACCGCCGAGCTGATTGACGGCTTTGAATCTCCCT
TTGGTATGGAGTTGCTGGCAACCGTGGATTGGCTTTTAACCCGCGAGCAGGTTACCCCCACCGTGCCTGCCCTGCGTGAA
GCCCTGAAGCGCTGGCCCATTCCAGGCGCGGCGCAACGCAAGACCCACCTCTTCCATGACCAAGCCATCAGCATTGCGCT
GGAGCGTTTGACCACGTCCCCGCTGTGCAACGCCGTACCACCACAGCCAATCTGCGTTTTGCCTGCGTGA

Similar Proteins

Only experimentally validated proteins are listed.

Loading, please wait
Protein
Organism
Identities (%)
Coverage (%)
Ha-value
No matching records found
Loading, please wait
Protein
Organism
Identities (%)
Coverage (%)
Ha-value
No matching records found

Structures

Toxin

Loading, please wait
Source
ID
Structure
No matching records found

Antitoxin

Loading, please wait
Source
ID
Structure
No matching records found

References