Detailed information of TA system
Overview
TA module
| Type | VIII | Classification (family/domain) | SdsR-RyeA/- |
| Location | 2076124..2076395 | Replicon | chromosome |
| Accession | NZ_AP024205 | ||
| Organism | Escherichia coli strain TA8571 | ||
Toxin (RNA)
| Gene name | SdsR | ||
| Locus tag | - | ||
| Coordinates | 2076254..2076357 (+) |
Antitoxin (RNA)
| Gene name | RyeA | ||
| Locus tag | - | ||
| Coordinates | 2076124..2076395 (-) |
Genomic Context
| Locus tag | Coordinates | Strand | Size (bp) | Protein ID | Product | Description |
|---|---|---|---|---|---|---|
| JG732_RS10015 | 2072680..2073342 | - | 663 | WP_063084778.1 | exodeoxyribonuclease X | - |
| JG732_RS10020 | 2073366..2074022 | - | 657 | WP_000011657.1 | carbon-nitrogen hydrolase family protein | - |
| JG732_RS10025 | 2074124..2074354 | - | 231 | WP_000916763.1 | DNA polymerase III subunit theta | - |
| JG732_RS10030 | 2074493..2074867 | + | 375 | WP_000168747.1 | CopC domain-containing protein YobA | - |
| JG732_RS10035 | 2074871..2075743 | + | 873 | WP_000879294.1 | copper homeostasis membrane protein CopD | - |
| JG732_RS10040 | 2075756..2076097 | + | 342 | WP_000976472.1 | YebY family protein | - |
| - | 2076124..2076395 | - | 272 | - | - | Antitoxin |
| - | 2076254..2076357 | + | 104 | - | - | Toxin |
| JG732_RS10045 | 2076492..2077148 | + | 657 | WP_000812724.1 | protein-serine/threonine phosphatase | - |
| JG732_RS10050 | 2077149..2077340 | - | 192 | WP_001296140.1 | YebW family protein | - |
| JG732_RS10055 | 2077445..2077681 | - | 237 | WP_001295499.1 | DUF1480 family protein | - |
| JG732_RS10060 | 2077799..2079238 | - | 1440 | WP_000057022.1 | 16S rRNA (cytosine(1407)-C(5))-methyltransferase RsmF | - |
Associated MGEs
| MGE detail |
Similar MGEs |
Relative position |
MGE Type | Cargo ARG | Virulence gene | Coordinates | Length (bp) |
|---|
Relative position:
(1) inside: TA loci is completely located inside the MGE;
(2) overlap: TA loci is partially overlapped with the MGE;
(3) flank: The TA loci is located in the 5 kb flanking regions of MGE.
Sequences
Toxin
Download Length: 104 bp
>T38156 NZ_AP024205:2076254-2076357 [Escherichia coli]
GGCAAGGCAACTAAGCCTGCATTAATGCCAACTTTTAGCGCACGGCTCTCTCCCAAGAGCCATTTCCCTGGACCGAATAC
AGGAATCGTGTTCGGTCTCTTTTT
GGCAAGGCAACTAAGCCTGCATTAATGCCAACTTTTAGCGCACGGCTCTCTCCCAAGAGCCATTTCCCTGGACCGAATAC
AGGAATCGTGTTCGGTCTCTTTTT
Antitoxin
Download Length: 272 bp
>AT38156 NZ_AP024205:c2076395-2076124 [Escherichia coli]
AAAGTCAGCGAAGGAAATGCTTCTGGCTTTTAACAGATAAAAAGAGACCGAACACGATTCCTGTATTCGGTCCAGGGAAA
TGGCTCTTGGGAGAGAGCCGTGCGCTAAAAGTTGGCATTAATGCAGGCTTAGTTGCCTTGCCCTTTAAGAATAGATGACG
ACGCCAGGTTTTCCAGTTTGCGTGCAAAATGGTCAATAAAAAGCGCGGTAGTCATCAGCTTAAATGTTAAAAACCGCCCG
TTCTGGTGAAAGAACTGAGGCGGTTTTTTTAT
AAAGTCAGCGAAGGAAATGCTTCTGGCTTTTAACAGATAAAAAGAGACCGAACACGATTCCTGTATTCGGTCCAGGGAAA
TGGCTCTTGGGAGAGAGCCGTGCGCTAAAAGTTGGCATTAATGCAGGCTTAGTTGCCTTGCCCTTTAAGAATAGATGACG
ACGCCAGGTTTTCCAGTTTGCGTGCAAAATGGTCAATAAAAAGCGCGGTAGTCATCAGCTTAAATGTTAAAAACCGCCCG
TTCTGGTGAAAGAACTGAGGCGGTTTTTTTAT
