Detailed information of TA system
Overview
TA module
| Type | VIII | Classification (family/domain) | SdsR-RyeA/- |
| Location | 1832047..1832192 | Replicon | chromosome |
| Accession | NZ_AP024173 | ||
| Organism | Klebsiella pneumoniae strain KSB1_9A | ||
Toxin (RNA)
| Gene name | SdsR | ||
| Locus tag | - | ||
| Coordinates | 1832083..1832185 (+) |
Antitoxin (RNA)
| Gene name | RyeA | ||
| Locus tag | - | ||
| Coordinates | 1832047..1832192 (-) |
Genomic Context
| Locus tag | Coordinates | Strand | Size (bp) | Protein ID | Product | Description |
|---|---|---|---|---|---|---|
| JGR95_RS08835 | 1827177..1829237 | + | 2061 | WP_004151449.1 | oligopeptidase B | - |
| JGR95_RS08840 | 1829241..1829900 | - | 660 | WP_021440386.1 | exodeoxyribonuclease X | - |
| JGR95_RS08845 | 1829979..1830209 | - | 231 | WP_002911406.1 | DNA polymerase III subunit theta | - |
| JGR95_RS08850 | 1830322..1830696 | + | 375 | WP_004151448.1 | CopC domain-containing protein YobA | - |
| JGR95_RS08855 | 1830700..1831569 | + | 870 | WP_201358048.1 | copper homeostasis membrane protein CopD | - |
| JGR95_RS08860 | 1831586..1831924 | + | 339 | WP_002911404.1 | YebY family protein | - |
| - | 1832047..1832192 | - | 146 | - | - | Antitoxin |
| - | 1832083..1832185 | + | 103 | - | - | Toxin |
| JGR95_RS08865 | 1832560..1832703 | - | 144 | WP_002911398.1 | Ecr family regulatory small membrane protein | - |
| JGR95_RS08870 | 1832808..1833763 | - | 956 | Protein_1730 | DUF535 domain-containing protein | - |
| JGR95_RS08875 | 1833920..1834573 | + | 654 | WP_004175436.1 | protein-serine/threonine phosphatase | - |
| JGR95_RS08880 | 1834570..1834761 | - | 192 | WP_002911395.1 | YebW family protein | - |
| JGR95_RS08885 | 1834859..1835098 | - | 240 | WP_002911393.1 | YebV family protein | - |
| JGR95_RS08890 | 1835214..1836647 | - | 1434 | WP_004148845.1 | 16S rRNA (cytosine(1407)-C(5))-methyltransferase RsmF | - |
Associated MGEs
| MGE detail |
Similar MGEs |
Relative position |
MGE Type | Cargo ARG | Virulence gene | Coordinates | Length (bp) |
|---|
Relative position:
(1) inside: TA loci is completely located inside the MGE;
(2) overlap: TA loci is partially overlapped with the MGE;
(3) flank: The TA loci is located in the 5 kb flanking regions of MGE.
Sequences
Toxin
Download Length: 103 bp
>T38089 NZ_AP024173:1832083-1832185 [Klebsiella pneumoniae]
GCAAGGCGACTTAGCCTGCATTAATGCCAACTTTTAGCGCACGGCTCTCTCCCAAGAGCCATTTCCCTGGACCGAATACA
GGAATCGTATTCGGTCTCTTTTT
GCAAGGCGACTTAGCCTGCATTAATGCCAACTTTTAGCGCACGGCTCTCTCCCAAGAGCCATTTCCCTGGACCGAATACA
GGAATCGTATTCGGTCTCTTTTT
Antitoxin
Download Length: 146 bp
>AT38089 NZ_AP024173:c1832192-1832047 [Klebsiella pneumoniae]
TAAAGATAAAAAGAGACCGAATACGATTCCTGTATTCGGTCCAGGGAAATGGCTCTTGGGAGAGAGCCGTGCGCTAAAAG
TTGGCATTAATGCAGGCTAAGTCGCCTTGCACTATAAGAATAGTTTAACGCGTCAGCTTTTCCAGT
TAAAGATAAAAAGAGACCGAATACGATTCCTGTATTCGGTCCAGGGAAATGGCTCTTGGGAGAGAGCCGTGCGCTAAAAG
TTGGCATTAATGCAGGCTAAGTCGCCTTGCACTATAAGAATAGTTTAACGCGTCAGCTTTTCCAGT
