Detailed information of TA system
Overview
TA module
| Type | VIII | Classification (family/domain) | SdsR-RyeA/- |
| Location | 2070697..2070968 | Replicon | chromosome |
| Accession | NZ_AP024130 | ||
| Organism | Escherichia coli strain SI-NP020 | ||
Toxin (RNA)
| Gene name | SdsR | ||
| Locus tag | - | ||
| Coordinates | 2070827..2070930 (+) |
Antitoxin (RNA)
| Gene name | RyeA | ||
| Locus tag | - | ||
| Coordinates | 2070697..2070968 (-) |
Genomic Context
| Locus tag | Coordinates | Strand | Size (bp) | Protein ID | Product | Description |
|---|---|---|---|---|---|---|
| FFK26_RS10040 | 2067252..2067914 | - | 663 | WP_000944256.1 | exodeoxyribonuclease X | - |
| FFK26_RS10045 | 2067938..2068594 | - | 657 | WP_000011658.1 | carbon-nitrogen hydrolase family protein YobB | - |
| FFK26_RS10050 | 2068696..2068926 | - | 231 | WP_000916763.1 | DNA polymerase III subunit theta | - |
| FFK26_RS10055 | 2069065..2069439 | + | 375 | WP_137564463.1 | CopC domain-containing protein YobA | - |
| FFK26_RS10060 | 2069443..2070315 | + | 873 | WP_137564462.1 | copper homeostasis membrane protein CopD | - |
| FFK26_RS10065 | 2070328..2070669 | + | 342 | WP_000976492.1 | YebY family protein | - |
| - | 2070697..2070968 | - | 272 | - | - | Antitoxin |
| - | 2070827..2070930 | + | 104 | - | - | Toxin |
| FFK26_RS10070 | 2071065..2071721 | + | 657 | WP_000812724.1 | protein-serine/threonine phosphatase | - |
| FFK26_RS10075 | 2071722..2071913 | - | 192 | WP_001296140.1 | YebW family protein | - |
| FFK26_RS10080 | 2072018..2072254 | - | 237 | WP_001295499.1 | YebV family protein | - |
| FFK26_RS10085 | 2072372..2073811 | - | 1440 | WP_001307251.1 | 16S rRNA (cytosine(1407)-C(5))-methyltransferase RsmF | - |
Associated MGEs
| MGE detail |
Similar MGEs |
Relative position |
MGE Type | Cargo ARG | Virulence gene | Coordinates | Length (bp) |
|---|
Relative position:
(1) inside: TA loci is completely located inside the MGE;
(2) overlap: TA loci is partially overlapped with the MGE;
(3) flank: The TA loci is located in the 5 kb flanking regions of MGE.
Sequences
Toxin
Download Length: 104 bp
>T38020 NZ_AP024130:2070827-2070930 [Escherichia coli]
GGCAAGGCAACTAAGCCTGCATTAATGCCAACTTTTAGCGCACGGCTCTCTCCCAAGAGCCATTTCCCTGGACCGAATAC
AGGAATCGTGTTCGGTCTCTTTTT
GGCAAGGCAACTAAGCCTGCATTAATGCCAACTTTTAGCGCACGGCTCTCTCCCAAGAGCCATTTCCCTGGACCGAATAC
AGGAATCGTGTTCGGTCTCTTTTT
Antitoxin
Download Length: 272 bp
>AT38020 NZ_AP024130:c2070968-2070697 [Escherichia coli]
AAAGTCAGCGAAGGAAATGCTTCTGGCTTTTAACAGATAAAAAGAGACCGAACACGATTCCTGTATTCGGTCCAGGGAAA
TGGCTCTTGGGAGAGAGCCGTGCGCTAAAAGTTGGCATTAATGCAGGCTTAGTTGCCTTGCCCTTTAAGAATAGATGACG
ACGCCAGGTTTTCCAGTTTGCGTGCAAAATGGTCAATAAAAAGCGTGGTGGTCATCAGCTGAAATGTTAAAAACCGCCCG
TTCTGGTGAAAGAACTGAGGCGGTTTTTTTAT
AAAGTCAGCGAAGGAAATGCTTCTGGCTTTTAACAGATAAAAAGAGACCGAACACGATTCCTGTATTCGGTCCAGGGAAA
TGGCTCTTGGGAGAGAGCCGTGCGCTAAAAGTTGGCATTAATGCAGGCTTAGTTGCCTTGCCCTTTAAGAATAGATGACG
ACGCCAGGTTTTCCAGTTTGCGTGCAAAATGGTCAATAAAAAGCGTGGTGGTCATCAGCTGAAATGTTAAAAACCGCCCG
TTCTGGTGAAAGAACTGAGGCGGTTTTTTTAT
