Detailed information of TA system    

insolicoBioinformatically predicted

Overview

TA module


Type VIII Classification (family/domain) SdsR-RyeA/-
Location 2818705..2818976 Replicon chromosome
Accession NZ_AP024126
Organism Escherichia coli strain NS-NP030

Toxin (RNA)


Gene name SdsR
Locus tag -
Coordinates 2818743..2818846 (-)

Antitoxin (RNA)


Gene name RyeA
Locus tag -
Coordinates 2818705..2818976 (+)

Genomic Context

Locus tag Coordinates Strand Size (bp) Protein ID Product Description
FFJ14_RS13780 2815862..2817301 + 1440 WP_000057022.1 16S rRNA (cytosine(1407)-C(5))-methyltransferase RsmF -
FFJ14_RS13785 2817419..2817655 + 237 WP_001295499.1 YebV family protein -
FFJ14_RS13790 2817760..2817951 + 192 WP_001296140.1 YebW family protein -
FFJ14_RS13795 2817952..2818608 - 657 WP_000812724.1 protein-serine/threonine phosphatase -
- 2818705..2818976 + 272 - - Antitoxin
- 2818743..2818846 - 104 - - Toxin
FFJ14_RS13800 2819004..2819345 - 342 WP_000976492.1 YebY family protein -
FFJ14_RS13805 2819358..2820230 - 873 WP_000879280.1 copper homeostasis membrane protein CopD -
FFJ14_RS13810 2820234..2820608 - 375 WP_000204699.1 CopC domain-containing protein YobA -
FFJ14_RS13815 2820747..2820977 + 231 WP_000916763.1 DNA polymerase III subunit theta -
FFJ14_RS13820 2821079..2821735 + 657 WP_000011652.1 carbon-nitrogen hydrolase family protein YobB -
FFJ14_RS13825 2821759..2822421 + 663 WP_000944256.1 exodeoxyribonuclease X -

Associated MGEs

MGE
detail		 Similar
MGEs		 Relative
position		 MGE Type Cargo ARG Virulence gene Coordinates Length (bp)


Relative position:
(1) inside: TA loci is completely located inside the MGE;
(2) overlap: TA loci is partially overlapped with the MGE;
(3) flank: The TA loci is located in the 5 kb flanking regions of MGE.


Sequences

Toxin        


Download         Length: 104 bp

>T37990 NZ_AP024126:c2818846-2818743 [Escherichia coli]
GGCAAGGCAACTAAGCCTGCATTAATGCCAACTTTTAGCGCACGGCTCTCTCCCAAGAGCCATTTCCCTGGACCGAATAC
AGGAATCGTGTTCGGTCTCTTTTT

Antitoxin


Download         Length: 272 bp

>AT37990 NZ_AP024126:2818705-2818976 [Escherichia coli]
AAAGTCAGCGAAGGAAATGCTTCTGGCTTTTAACAGATAAAAAGAGACCGAACACGATTCCTGTATTCGGTCCAGGGAAA
TGGCTCTTGGGAGAGAGCCGTGCGCTAAAAGTTGGCATTAATGCAGGCTTAGTTGCCTTGCCCTTTAAGAATAGATGACG
ACGCCAGGTTTTCCAGTTTGCGTGCAAAATGGTCAATAAAAAGCGTGGTGGTCATCAGCTGAAATGTTAAAAACCGCCCG
TTCTGGTGAAAGAACTGAGGCGGTTTTTTTAT

Structures

Antitoxin

Download structure file

Antitoxin

Download structure file

References