Detailed information of TA system    

insolicoBioinformatically predicted

Overview

TA module


Type VIII Classification (family/domain) SdsR-RyeA/-
Location 1108246..1108517 Replicon chromosome
Accession NZ_AP024123
Organism Escherichia coli strain KS-NP019

Toxin (RNA)


Gene name SdsR
Locus tag -
Coordinates 1108284..1108387 (-)

Antitoxin (RNA)


Gene name RyeA
Locus tag -
Coordinates 1108246..1108517 (+)

Genomic Context

Locus tag Coordinates Strand Size (bp) Protein ID Product Description
FFG67_RS05370 1105403..1106842 + 1440 WP_000057022.1 16S rRNA (cytosine(1407)-C(5))-methyltransferase RsmF -
FFG67_RS05375 1106960..1107196 + 237 WP_001295499.1 YebV family protein -
FFG67_RS05380 1107301..1107492 + 192 WP_001296140.1 YebW family protein -
FFG67_RS05385 1107493..1108149 - 657 WP_000812724.1 protein-serine/threonine phosphatase -
- 1108246..1108517 + 272 - - Antitoxin
- 1108284..1108387 - 104 - - Toxin
FFG67_RS05390 1108545..1108886 - 342 WP_000976492.1 YebY family protein -
FFG67_RS05395 1108899..1109771 - 873 WP_000879280.1 copper homeostasis membrane protein CopD -
FFG67_RS05400 1109775..1110149 - 375 WP_000204699.1 CopC domain-containing protein YobA -
FFG67_RS05405 1110288..1110518 + 231 WP_000916763.1 DNA polymerase III subunit theta -
FFG67_RS05410 1110620..1111276 + 657 WP_000011652.1 carbon-nitrogen hydrolase family protein YobB -
FFG67_RS05415 1111300..1111962 + 663 WP_000944256.1 exodeoxyribonuclease X -

Associated MGEs

MGE
detail		 Similar
MGEs		 Relative
position		 MGE Type Cargo ARG Virulence gene Coordinates Length (bp)


Relative position:
(1) inside: TA loci is completely located inside the MGE;
(2) overlap: TA loci is partially overlapped with the MGE;
(3) flank: The TA loci is located in the 5 kb flanking regions of MGE.


Sequences

Toxin        


Download         Length: 104 bp

>T37945 NZ_AP024123:c1108387-1108284 [Escherichia coli]
GGCAAGGCAACTAAGCCTGCATTAATGCCAACTTTTAGCGCACGGCTCTCTCCCAAGAGCCATTTCCCTGGACCGAATAC
AGGAATCGTGTTCGGTCTCTTTTT

Antitoxin


Download         Length: 272 bp

>AT37945 NZ_AP024123:1108246-1108517 [Escherichia coli]
AAAGTCAGCGAAGGAAATGCTTCTGGCTTTTAACAGATAAAAAGAGACCGAACACGATTCCTGTATTCGGTCCAGGGAAA
TGGCTCTTGGGAGAGAGCCGTGCGCTAAAAGTTGGCATTAATGCAGGCTTAGTTGCCTTGCCCTTTAAGAATAGATGACG
ACGCCAGGTTTTCCAGTTTGCGTGCAAAATGGTCAATAAAAAGCGTGGTGGTCATCAGCTGAAATGTTAAAAACCGCCCG
TTCTGGTGAAAGAACTGAGGCGGTTTTTTTAT

Structures

Antitoxin

Download structure file

Antitoxin

Download structure file

References