Detailed information of TA system
Overview
TA module
| Type | VIII | Classification (family/domain) | SdsR-RyeA/- |
| Location | 2352896..2353167 | Replicon | chromosome |
| Accession | NZ_AP024112 | ||
| Organism | Escherichia coli strain ECSC054 | ||
Toxin (RNA)
| Gene name | SdsR | ||
| Locus tag | - | ||
| Coordinates | 2353026..2353129 (+) |
Antitoxin (RNA)
| Gene name | RyeA | ||
| Locus tag | - | ||
| Coordinates | 2352896..2353167 (-) |
Genomic Context
| Locus tag | Coordinates | Strand | Size (bp) | Protein ID | Product | Description |
|---|---|---|---|---|---|---|
| FE985_RS11070 | 2349451..2350113 | - | 663 | WP_000944256.1 | exodeoxyribonuclease X | - |
| FE985_RS11075 | 2350137..2350793 | - | 657 | WP_000011653.1 | carbon-nitrogen hydrolase family protein YobB | - |
| FE985_RS11080 | 2350895..2351125 | - | 231 | WP_000916763.1 | DNA polymerase III subunit theta | - |
| FE985_RS11085 | 2351264..2351638 | + | 375 | WP_000168747.1 | CopC domain-containing protein YobA | - |
| FE985_RS11090 | 2351642..2352514 | + | 873 | WP_001551232.1 | copper homeostasis membrane protein CopD | - |
| FE985_RS11095 | 2352527..2352868 | + | 342 | WP_000976472.1 | YebY family protein | - |
| - | 2352896..2353167 | - | 272 | - | - | Antitoxin |
| - | 2353026..2353129 | + | 104 | - | - | Toxin |
| FE985_RS11100 | 2353264..2353920 | + | 657 | WP_001551231.1 | protein-serine/threonine phosphatase | - |
| FE985_RS11105 | 2353921..2354112 | - | 192 | WP_001296140.1 | YebW family protein | - |
| FE985_RS11110 | 2354217..2354453 | - | 237 | WP_001295499.1 | YebV family protein | - |
| FE985_RS11115 | 2354571..2356010 | - | 1440 | WP_024186439.1 | 16S rRNA (cytosine(1407)-C(5))-methyltransferase RsmF | - |
Associated MGEs
| MGE detail |
Similar MGEs |
Relative position |
MGE Type | Cargo ARG | Virulence gene | Coordinates | Length (bp) |
|---|---|---|---|---|---|---|---|
| - | inside | Prophage | - | - | 2345586..2358723 | 13137 |
Relative position:
(1) inside: TA loci is completely located inside the MGE;
(2) overlap: TA loci is partially overlapped with the MGE;
(3) flank: The TA loci is located in the 5 kb flanking regions of MGE.
Sequences
Toxin
Download Length: 104 bp
>T37872 NZ_AP024112:2353026-2353129 [Escherichia coli]
GGCAAGGCAACTAAGCCTGCATTAATGCCAACTTTTAGCGCACGGCTCTCTCCCAAGAGCCATTTCCCTGGACCGAATAC
AGGAATCGTGTTCGGTCTCTTTTT
GGCAAGGCAACTAAGCCTGCATTAATGCCAACTTTTAGCGCACGGCTCTCTCCCAAGAGCCATTTCCCTGGACCGAATAC
AGGAATCGTGTTCGGTCTCTTTTT
Antitoxin
Download Length: 272 bp
>AT37872 NZ_AP024112:c2353167-2352896 [Escherichia coli]
AAAGTCAGCGAAGGGAATGCTTCTGGCTTTTAACAGATAAAAAGAGACCGAACACGATTCCTGTATTCGGTCCAGGGAAA
TGGCTCTTGGGAGAGAGCCGTGCGCTAAAAGTTGGCATTAATGCAGGCTTAGTTGCCTTGCCCTTTAAGAATAGATGACG
ACGCCAGGTTTTCCAGTTTGCGTGCAAAATGGTCAATAAAAAGCGCGGTGGCCATCAGCTTAAATGTTAAAAACCGCCCG
TTCTGGTGAAAGAACTGAGGCGGTTTTTTTAT
AAAGTCAGCGAAGGGAATGCTTCTGGCTTTTAACAGATAAAAAGAGACCGAACACGATTCCTGTATTCGGTCCAGGGAAA
TGGCTCTTGGGAGAGAGCCGTGCGCTAAAAGTTGGCATTAATGCAGGCTTAGTTGCCTTGCCCTTTAAGAATAGATGACG
ACGCCAGGTTTTCCAGTTTGCGTGCAAAATGGTCAATAAAAAGCGCGGTGGCCATCAGCTTAAATGTTAAAAACCGCCCG
TTCTGGTGAAAGAACTGAGGCGGTTTTTTTAT
