Detailed information of TA system
Overview
TA module
| Type | VIII | Classification (family/domain) | SdsR-RyeA/- |
| Location | 2823711..2823856 | Replicon | chromosome |
| Accession | NZ_AP023452 | ||
| Organism | Citrobacter koseri strain MPUCK001 | ||
Toxin (RNA)
| Gene name | SdsR | ||
| Locus tag | - | ||
| Coordinates | 2823718..2823821 (-) |
Antitoxin (RNA)
| Gene name | RyeA | ||
| Locus tag | - | ||
| Coordinates | 2823711..2823856 (+) |
Genomic Context
| Locus tag | Coordinates | Strand | Size (bp) | Protein ID | Product | Description |
|---|---|---|---|---|---|---|
| MPUCK001_RS13100 | 2819463..2821346 | + | 1884 | WP_190286621.1 | TonB-dependent receptor | - |
| MPUCK001_RS13105 | 2821356..2822372 | + | 1017 | WP_190286622.1 | IS5-like element IS5 family transposase | - |
| MPUCK001_RS13110 | 2822519..2822749 | + | 231 | Protein_2574 | TonB-dependent receptor | - |
| MPUCK001_RS13115 | 2823119..2823310 | + | 192 | WP_012132027.1 | YlcI/YnfO family protein | - |
| - | 2823711..2823856 | + | 146 | - | - | Antitoxin |
| - | 2823718..2823821 | - | 104 | - | - | Toxin |
| MPUCK001_RS13120 | 2823977..2824315 | - | 339 | WP_012132024.1 | YebY family protein | - |
| MPUCK001_RS13125 | 2824332..2825207 | - | 876 | WP_104868547.1 | copper homeostasis membrane protein CopD | - |
| MPUCK001_RS13130 | 2825207..2825581 | - | 375 | WP_012132022.1 | CopC domain-containing protein YobA | - |
| MPUCK001_RS13135 | 2825722..2825952 | + | 231 | WP_024130259.1 | DNA polymerase III subunit theta | - |
| MPUCK001_RS13140 | 2826058..2826714 | + | 657 | WP_024130258.1 | carbon-nitrogen hydrolase family protein | - |
| MPUCK001_RS13145 | 2826738..2827400 | + | 663 | WP_012132019.1 | exodeoxyribonuclease X | - |
Associated MGEs
| MGE detail |
Similar MGEs |
Relative position |
MGE Type | Cargo ARG | Virulence gene | Coordinates | Length (bp) |
|---|---|---|---|---|---|---|---|
| - | flank | IS/Tn | - | - | 2821392..2822372 | 980 |
Relative position:
(1) inside: TA loci is completely located inside the MGE;
(2) overlap: TA loci is partially overlapped with the MGE;
(3) flank: The TA loci is located in the 5 kb flanking regions of MGE.
Sequences
Toxin
Download Length: 104 bp
>T37789 NZ_AP023452:c2823821-2823718 [Citrobacter koseri]
GGCAAGGCGACTTAGCCTGCATTAATGCCAACTTTTAGCGCACGGCTCTCTCCCAAGAGCCATTTCCCTGGACCGAATAC
AGGAATCGTATTCGGTCTCTTTTT
GGCAAGGCGACTTAGCCTGCATTAATGCCAACTTTTAGCGCACGGCTCTCTCCCAAGAGCCATTTCCCTGGACCGAATAC
AGGAATCGTATTCGGTCTCTTTTT
Antitoxin
Download Length: 146 bp
>AT37789 NZ_AP023452:2823711-2823856 [Citrobacter koseri]
AACAGATAAAAAGAGACCGAATACGATTCCTGTATTCGGTCCAGGGAAATGGCTCTTGGGAGAGAGCCGTGCGCTAAAAG
TTGGCATTAATGCAGGCTAAGTCGCCTTGCCCTTTAAGAATAGATGACGACGCCAGGTTTTCCAGT
AACAGATAAAAAGAGACCGAATACGATTCCTGTATTCGGTCCAGGGAAATGGCTCTTGGGAGAGAGCCGTGCGCTAAAAG
TTGGCATTAATGCAGGCTAAGTCGCCTTGCCCTTTAAGAATAGATGACGACGCCAGGTTTTCCAGT
