Detailed information of TA system
Overview
TA module
| Type | II | Classification (family/domain) | relBE/ParE-RelB |
| Location | 185888..186414 | Replicon | plasmid pN260-2 |
| Accession | NZ_AP023449 | ||
| Organism | Enterobacter roggenkampii strain OIPH-N260 | ||
Toxin (Protein)
| Gene name | relE | Uniprot ID | S1EXL1 |
| Locus tag | OIPHN260_RS26015 | Protein ID | WP_000323025.1 |
| Coordinates | 185888..186175 (-) | Length | 96 a.a. |
Antitoxin (Protein)
| Gene name | relB | Uniprot ID | S1F6D3 |
| Locus tag | OIPHN260_RS26020 | Protein ID | WP_000534858.1 |
| Coordinates | 186175..186414 (-) | Length | 80 a.a. |
Genomic Context
| Locus tag | Coordinates | Strand | Size (bp) | Protein ID | Product | Description |
|---|---|---|---|---|---|---|
| OIPHN260_RS25975 | 181199..181492 | - | 294 | WP_045620738.1 | hypothetical protein | - |
| OIPHN260_RS25980 | 182181..182509 | - | 329 | Protein_167 | hypothetical protein | - |
| OIPHN260_RS25985 | 182551..183342 | - | 792 | WP_045620736.1 | N-6 DNA methylase | - |
| OIPHN260_RS25990 | 183383..183583 | - | 201 | WP_013087182.1 | hypothetical protein | - |
| OIPHN260_RS25995 | 183671..184121 | - | 451 | Protein_170 | hypothetical protein | - |
| OIPHN260_RS26000 | 184199..184405 | - | 207 | WP_045337189.1 | hypothetical protein | - |
| OIPHN260_RS26005 | 184467..184781 | - | 315 | WP_045337198.1 | hypothetical protein | - |
| OIPHN260_RS26010 | 185658..185816 | - | 159 | WP_008325141.1 | type I toxin-antitoxin system Hok family toxin | - |
| OIPHN260_RS26015 | 185888..186175 | - | 288 | WP_000323025.1 | type II toxin-antitoxin system mRNA interferase RelE | Toxin |
| OIPHN260_RS26020 | 186175..186414 | - | 240 | WP_000534858.1 | type II toxin-antitoxin system antitoxin RelB | Antitoxin |
| OIPHN260_RS26025 | 186677..187600 | - | 924 | WP_000167917.1 | cation diffusion facilitator family transporter | - |
| OIPHN260_RS26030 | 187800..188375 | - | 576 | Protein_177 | cytochrome b/b6 domain-containing protein | - |
| OIPHN260_RS26035 | 189018..190360 | - | 1343 | Protein_178 | ISNCY family transposase | - |
| OIPHN260_RS26040 | 190394..190495 | - | 102 | WP_159106190.1 | DUF5431 family protein | - |
| - | 190481..190605 | - | 125 | NuclAT_0 | - | - |
| - | 190481..190605 | - | 125 | NuclAT_0 | - | - |
| - | 190481..190605 | - | 125 | NuclAT_0 | - | - |
| - | 190481..190605 | - | 125 | NuclAT_0 | - | - |
| OIPHN260_RS26045 | 190665..191039 | - | 375 | WP_045337335.1 | hypothetical protein | - |
| OIPHN260_RS26050 | 191095..191271 | - | 177 | WP_165322137.1 | hypothetical protein | - |
Associated MGEs
| MGE detail |
Similar MGEs |
Relative position |
MGE Type | Cargo ARG | Virulence gene | Coordinates | Length (bp) |
|---|---|---|---|---|---|---|---|
| - | inside | Non-Mobilizable plasmid | mcr-10 | mrkA / mrkB / mrkC / mrkF / mrkJ | 1..244996 | 244996 |
Relative position:
(1) inside: TA loci is completely located inside the MGE;
(2) overlap: TA loci is partially overlapped with the MGE;
(3) flank: The TA loci is located in the 5 kb flanking regions of MGE.
Sequences
Toxin
Download Length: 96 a.a. Molecular weight: 11225.22 Da Isoelectric Point: 10.1967
>T37783 WP_000323025.1 NZ_AP023449:c186175-185888 [Enterobacter roggenkampii]
MAYFLDFDERALKEWRKLGSTVREQLKKKLVEVLESPRIEANKLRGMPDCYKIKLRSSGYRLVYQVIDEKVVVFVISVGK
RERSEVYSEAVKRIL
MAYFLDFDERALKEWRKLGSTVREQLKKKLVEVLESPRIEANKLRGMPDCYKIKLRSSGYRLVYQVIDEKVVVFVISVGK
RERSEVYSEAVKRIL
Download Length: 288 bp
>T37783 NZ_AP023449:c186175-185888 [Enterobacter roggenkampii]
ATGGCGTATTTTCTGGATTTTGACGAGCGGGCACTAAAGGAATGGCGAAAGCTGGGCTCGACGGTACGTGAACAGTTGAA
AAAGAAGCTGGTTGAAGTACTTGAGTCACCCCGGATTGAAGCAAACAAGCTCCGTGGTATGCCTGATTGTTACAAGATTA
AGCTCCGGTCTTCAGGCTATCGCCTTGTATACCAGGTTATAGACGAGAAAGTTGTCGTTTTCGTGATTTCTGTTGGGAAA
AGAGAACGCTCGGAAGTATATAGCGAGGCGGTCAAACGCATTCTCTGA
ATGGCGTATTTTCTGGATTTTGACGAGCGGGCACTAAAGGAATGGCGAAAGCTGGGCTCGACGGTACGTGAACAGTTGAA
AAAGAAGCTGGTTGAAGTACTTGAGTCACCCCGGATTGAAGCAAACAAGCTCCGTGGTATGCCTGATTGTTACAAGATTA
AGCTCCGGTCTTCAGGCTATCGCCTTGTATACCAGGTTATAGACGAGAAAGTTGTCGTTTTCGTGATTTCTGTTGGGAAA
AGAGAACGCTCGGAAGTATATAGCGAGGCGGTCAAACGCATTCTCTGA
Antitoxin
Download Length: 80 a.a. Molecular weight: 9071.48 Da Isoelectric Point: 4.5230
>AT37783 WP_000534858.1 NZ_AP023449:c186414-186175 [Enterobacter roggenkampii]
MGSINLRIDDELKARSYAALEKMGVTPSEALRLMLEYIADNERLPFKQTLLSDEDAELVEIVKERLRNPKPVRVTLDEL
MGSINLRIDDELKARSYAALEKMGVTPSEALRLMLEYIADNERLPFKQTLLSDEDAELVEIVKERLRNPKPVRVTLDEL
Download Length: 240 bp
>AT37783 NZ_AP023449:c186414-186175 [Enterobacter roggenkampii]
ATGGGTAGCATTAACCTACGTATTGACGATGAACTTAAAGCGCGTTCTTACGCCGCGCTTGAAAAAATGGGCGTAACTCC
TTCTGAAGCGCTTCGTCTCATGCTCGAGTATATCGCTGACAATGAACGCTTGCCGTTCAAACAGACACTCCTGAGTGATG
AAGATGCTGAACTTGTGGAGATAGTGAAAGAACGACTTCGTAATCCTAAGCCAGTACGTGTGACGCTGGATGAACTCTGA
ATGGGTAGCATTAACCTACGTATTGACGATGAACTTAAAGCGCGTTCTTACGCCGCGCTTGAAAAAATGGGCGTAACTCC
TTCTGAAGCGCTTCGTCTCATGCTCGAGTATATCGCTGACAATGAACGCTTGCCGTTCAAACAGACACTCCTGAGTGATG
AAGATGCTGAACTTGTGGAGATAGTGAAAGAACGACTTCGTAATCCTAAGCCAGTACGTGTGACGCTGGATGAACTCTGA
Similar Proteins
Only experimentally validated proteins are listed.
| Protein | Organism | Identities (%) | Coverage (%) | Ha-value |
|---|
| Protein | Organism | Identities (%) | Coverage (%) | Ha-value |
|---|