Detailed information of TA system
Overview
TA module
| Type | VIII | Classification (family/domain) | SdsR-RyeA/- |
| Location | 2891574..2891717 | Replicon | chromosome |
| Accession | NZ_AP023447 | ||
| Organism | Enterobacter roggenkampii strain OIPH-N260 | ||
Toxin (RNA)
| Gene name | SdsR | ||
| Locus tag | - | ||
| Coordinates | 2891579..2891682 (-) |
Antitoxin (RNA)
| Gene name | RyeA | ||
| Locus tag | - | ||
| Coordinates | 2891574..2891717 (+) |
Genomic Context
| Locus tag | Coordinates | Strand | Size (bp) | Protein ID | Product | Description |
|---|---|---|---|---|---|---|
| OIPHN260_RS14050 | 2887831..2889273 | + | 1443 | WP_202324048.1 | 16S rRNA (cytosine(1407)-C(5))-methyltransferase RsmF | - |
| OIPHN260_RS14055 | 2889379..2889618 | + | 240 | WP_008500472.1 | YebV family protein | - |
| OIPHN260_RS14060 | 2889653..2890297 | - | 645 | WP_202324049.1 | protein-serine/threonine phosphatase | - |
| OIPHN260_RS14065 | 2890474..2891415 | + | 942 | WP_025910080.1 | VirK/YbjX family protein | - |
| - | 2891574..2891717 | + | 144 | - | - | Antitoxin |
| - | 2891579..2891682 | - | 104 | - | - | Toxin |
| OIPHN260_RS14070 | 2891821..2892159 | - | 339 | WP_008500468.1 | YebY family protein | - |
| OIPHN260_RS14075 | 2892176..2893045 | - | 870 | WP_202324050.1 | copper homeostasis membrane protein CopD | - |
| OIPHN260_RS14080 | 2893047..2893418 | - | 372 | WP_008500466.1 | CopC domain-containing protein YobA | - |
| OIPHN260_RS14085 | 2893556..2893786 | + | 231 | WP_008500465.1 | DNA polymerase III subunit theta | - |
| OIPHN260_RS14090 | 2893897..2894547 | + | 651 | WP_008500464.1 | carbon-nitrogen hydrolase family protein | - |
| OIPHN260_RS14095 | 2894572..2895234 | + | 663 | WP_008500463.1 | exodeoxyribonuclease X | - |
Associated MGEs
| MGE detail |
Similar MGEs |
Relative position |
MGE Type | Cargo ARG | Virulence gene | Coordinates | Length (bp) |
|---|
Relative position:
(1) inside: TA loci is completely located inside the MGE;
(2) overlap: TA loci is partially overlapped with the MGE;
(3) flank: The TA loci is located in the 5 kb flanking regions of MGE.
Sequences
Toxin
Download Length: 104 bp
>T37770 NZ_AP023447:c2891682-2891579 [Enterobacter roggenkampii]
GGCAAGGCGACTTAGCCTGCATTAATGCCAACTTTTAGCGCACGGCTCTCTCCCAAGAGCCATTTCCCTGGACCGAATAC
AGGAATCGTATTCGGTCTCTTTTT
GGCAAGGCGACTTAGCCTGCATTAATGCCAACTTTTAGCGCACGGCTCTCTCCCAAGAGCCATTTCCCTGGACCGAATAC
AGGAATCGTATTCGGTCTCTTTTT
Antitoxin
Download Length: 144 bp
>AT37770 NZ_AP023447:2891574-2891717 [Enterobacter roggenkampii]
CAGATAAAAAGAGACCGAATACGATTCCTGTATTCGGTCCAGGGAAATGGCTCTTGGGAGAGAGCCGTGCGCTAAAAGTT
GGCATTAATGCAGGCTAAGTCGCCTTGCCTTTTAAGAATAGATGACGACGCCAGGTTTTCCAGT
CAGATAAAAAGAGACCGAATACGATTCCTGTATTCGGTCCAGGGAAATGGCTCTTGGGAGAGAGCCGTGCGCTAAAAGTT
GGCATTAATGCAGGCTAAGTCGCCTTGCCTTTTAAGAATAGATGACGACGCCAGGTTTTCCAGT
