Detailed information of TA system    

insolicoBioinformatically predicted

Overview

TA module


Type VIII Classification (family/domain) SdsR-RyeA/-
Location 2799067..2799338 Replicon chromosome
Accession NZ_AP023433
Organism Escherichia coli strain M719

Toxin (RNA)


Gene name SdsR
Locus tag -
Coordinates 2799105..2799208 (-)

Antitoxin (RNA)


Gene name RyeA
Locus tag -
Coordinates 2799067..2799338 (+)

Genomic Context

Locus tag Coordinates Strand Size (bp) Protein ID Product Description
M2043_RS13490 2796224..2797663 + 1440 WP_001352260.1 16S rRNA (cytosine(1407)-C(5))-methyltransferase RsmF -
M2043_RS13495 2797781..2798017 + 237 WP_001295499.1 YebV family protein -
M2043_RS13500 2798122..2798313 + 192 WP_000457842.1 YebW family protein -
M2043_RS13505 2798314..2798970 - 657 WP_000812724.1 protein-serine/threonine phosphatase -
- 2799067..2799338 + 272 - - Antitoxin
- 2799105..2799208 - 104 - - Toxin
M2043_RS13510 2799366..2799707 - 342 WP_000976476.1 YebY family protein -
M2043_RS13515 2799720..2800592 - 873 WP_000879289.1 copper homeostasis membrane protein CopD -
M2043_RS13520 2800596..2800970 - 375 WP_000168747.1 CopC domain-containing protein YobA -
M2043_RS13525 2801109..2801339 + 231 WP_000916763.1 DNA polymerase III subunit theta -
M2043_RS13530 2801441..2802097 + 657 WP_000011658.1 carbon-nitrogen hydrolase family protein YobB -
M2043_RS13535 2802121..2802783 + 663 WP_000944256.1 exodeoxyribonuclease X -

Associated MGEs

MGE
detail		 Similar
MGEs		 Relative
position		 MGE Type Cargo ARG Virulence gene Coordinates Length (bp)


Relative position:
(1) inside: TA loci is completely located inside the MGE;
(2) overlap: TA loci is partially overlapped with the MGE;
(3) flank: The TA loci is located in the 5 kb flanking regions of MGE.


Sequences

Toxin        


Download         Length: 104 bp

>T37729 NZ_AP023433:c2799208-2799105 [Escherichia coli]
GGCAAGGCAACTAAGCCTGCATTAATGCCAACTTTTAGCGCACGGCTCTCTCCCAAGAGCCATTTCCCTGGACCGAATAC
AGGAATCGTGTTCGGTCTCTTTTT

Antitoxin


Download         Length: 272 bp

>AT37729 NZ_AP023433:2799067-2799338 [Escherichia coli]
AAAGTCAGCGAAGGAAATGCTTCTGGCTTTTAACAGATAAAAAGAGACCGAACACGATTCCTGTATTCGGTCCAGGGAAA
TGGCTCTTGGGAGAGAGCCGTGCGCTAAAAGTTGGCATTAATGCAGGCTTAGTTGCCTTGCCCTTTAAGAATAGATGACG
ACGCCAGGTTTTCCAGTTTGCGTGCAAAATGGTCAATAAAAAGCGTGGTGGTCATCAGCTGAAATGTTAAAAACCGCCCG
TTCTGGTGAAAGAACTGAGGCGGTTTTTTTAT

Structures

Antitoxin

Download structure file

Antitoxin

Download structure file

References