Detailed information of TA system
Overview
TA module
| Type | VIII | Classification (family/domain) | SdsR-RyeA/- |
| Location | 1986544..1986815 | Replicon | chromosome |
| Accession | NZ_AP023427 | ||
| Organism | Escherichia coli strain HUE1 | ||
Toxin (RNA)
| Gene name | SdsR | ||
| Locus tag | - | ||
| Coordinates | 1986674..1986777 (+) |
Antitoxin (RNA)
| Gene name | RyeA | ||
| Locus tag | - | ||
| Coordinates | 1986544..1986815 (-) |
Genomic Context
| Locus tag | Coordinates | Strand | Size (bp) | Protein ID | Product | Description |
|---|---|---|---|---|---|---|
| IF662_RS09440 | 1983099..1983761 | - | 663 | WP_000944258.1 | exodeoxyribonuclease X | - |
| IF662_RS09445 | 1983785..1984441 | - | 657 | WP_000011658.1 | carbon-nitrogen hydrolase family protein | - |
| IF662_RS09450 | 1984543..1984773 | - | 231 | WP_000916763.1 | DNA polymerase III subunit theta | - |
| IF662_RS09455 | 1984912..1985286 | + | 375 | WP_000168747.1 | CopC domain-containing protein YobA | - |
| IF662_RS09460 | 1985290..1986162 | + | 873 | WP_000879295.1 | copper homeostasis membrane protein CopD | - |
| IF662_RS09465 | 1986175..1986516 | + | 342 | WP_000976472.1 | YebY family protein | - |
| - | 1986544..1986815 | - | 272 | - | - | Antitoxin |
| - | 1986674..1986777 | + | 104 | - | - | Toxin |
| IF662_RS09470 | 1986912..1987568 | + | 657 | WP_000812732.1 | protein-serine/threonine phosphatase | - |
| IF662_RS09475 | 1987569..1987760 | - | 192 | WP_001338167.1 | YebW family protein | - |
| IF662_RS09480 | 1987865..1988101 | - | 237 | WP_001338166.1 | DUF1480 family protein | - |
| IF662_RS09485 | 1988219..1989658 | - | 1440 | WP_063091473.1 | 16S rRNA (cytosine(1407)-C(5))-methyltransferase RsmF | - |
Associated MGEs
| MGE detail |
Similar MGEs |
Relative position |
MGE Type | Cargo ARG | Virulence gene | Coordinates | Length (bp) |
|---|
Relative position:
(1) inside: TA loci is completely located inside the MGE;
(2) overlap: TA loci is partially overlapped with the MGE;
(3) flank: The TA loci is located in the 5 kb flanking regions of MGE.
Sequences
Toxin
Download Length: 104 bp
>T37704 NZ_AP023427:1986674-1986777 [Escherichia coli]
GGCAAGGCAACTAAGCCTGCATTAATGCCAACTTTTAGCGCACGGCTCTCTCCCAAGAGCCATTTCCCTGGACCGAATAC
AGGAATCGTGTTCGGTCTCTTTTT
GGCAAGGCAACTAAGCCTGCATTAATGCCAACTTTTAGCGCACGGCTCTCTCCCAAGAGCCATTTCCCTGGACCGAATAC
AGGAATCGTGTTCGGTCTCTTTTT
Antitoxin
Download Length: 272 bp
>AT37704 NZ_AP023427:c1986815-1986544 [Escherichia coli]
AAAGTCAGCGAAGGAAATGCTTCTGGCTTTTAACAGATAAAAAGAGACCGAACACGATTCCTGTATTCGGTCCAGGGAAA
TGGCTCTTGGGAGAGAGCCGTGCGCTAAAAGTTGGCATTAATGCAGGCTTAGTTGCCTTGCCCTTTAAGAATAGATGACG
ACGCCAGGTTTTCCAGTTTGCGTGCAAAATGGTCAATAAAAAGCGCGGTGGTCATCAGCTTAAATGTTAAAAACCGCCCG
TTCTGGTGAAAGAACTGAGGCGGTTTTTTTAT
AAAGTCAGCGAAGGAAATGCTTCTGGCTTTTAACAGATAAAAAGAGACCGAACACGATTCCTGTATTCGGTCCAGGGAAA
TGGCTCTTGGGAGAGAGCCGTGCGCTAAAAGTTGGCATTAATGCAGGCTTAGTTGCCTTGCCCTTTAAGAATAGATGACG
ACGCCAGGTTTTCCAGTTTGCGTGCAAAATGGTCAATAAAAAGCGCGGTGGTCATCAGCTTAAATGTTAAAAACCGCCCG
TTCTGGTGAAAGAACTGAGGCGGTTTTTTTAT
