Detailed information of TA system
Overview
TA module
| Type | VIII | Classification (family/domain) | SdsR-RyeA/- |
| Location | 1898000..1898145 | Replicon | chromosome |
| Accession | NZ_AP023337 | ||
| Organism | Klebsiella pneumoniae strain MH15-269M | ||
Toxin (RNA)
| Gene name | SdsR | ||
| Locus tag | - | ||
| Coordinates | 1898036..1898138 (+) |
Antitoxin (RNA)
| Gene name | RyeA | ||
| Locus tag | - | ||
| Coordinates | 1898000..1898145 (-) |
Genomic Context
| Locus tag | Coordinates | Strand | Size (bp) | Protein ID | Product | Description |
|---|---|---|---|---|---|---|
| HRS02_RS09170 | 1893130..1895190 | + | 2061 | WP_004151449.1 | oligopeptidase B | - |
| HRS02_RS09175 | 1895194..1895853 | - | 660 | WP_002911407.1 | exodeoxyribonuclease X | - |
| HRS02_RS09180 | 1895932..1896162 | - | 231 | WP_002911406.1 | DNA polymerase III subunit theta | - |
| HRS02_RS09185 | 1896275..1896649 | + | 375 | WP_004151448.1 | CopC domain-containing protein YobA | - |
| HRS02_RS09190 | 1896653..1897522 | + | 870 | WP_004189267.1 | copper homeostasis membrane protein CopD | - |
| HRS02_RS09195 | 1897539..1897877 | + | 339 | WP_004189269.1 | YebY family protein | - |
| - | 1898000..1898145 | - | 146 | - | - | Antitoxin |
| - | 1898036..1898138 | + | 103 | - | - | Toxin |
| HRS02_RS09200 | 1898512..1898655 | - | 144 | WP_002911398.1 | Ecr family regulatory small membrane protein | - |
| HRS02_RS09205 | 1898760..1899728 | - | 969 | WP_004151446.1 | VirK/YbjX family protein | - |
| HRS02_RS09210 | 1899885..1900538 | + | 654 | WP_004189273.1 | protein-serine/threonine phosphatase | - |
| HRS02_RS09215 | 1900535..1900726 | - | 192 | WP_002911395.1 | YebW family protein | - |
| HRS02_RS09220 | 1900824..1901063 | - | 240 | WP_002911393.1 | YebV family protein | - |
| HRS02_RS09225 | 1901179..1902612 | - | 1434 | WP_004148845.1 | 16S rRNA (cytosine(1407)-C(5))-methyltransferase RsmF | - |
Associated MGEs
| MGE detail |
Similar MGEs |
Relative position |
MGE Type | Cargo ARG | Virulence gene | Coordinates | Length (bp) |
|---|
Relative position:
(1) inside: TA loci is completely located inside the MGE;
(2) overlap: TA loci is partially overlapped with the MGE;
(3) flank: The TA loci is located in the 5 kb flanking regions of MGE.
Sequences
Toxin
Download Length: 103 bp
>T37621 NZ_AP023337:1898036-1898138 [Klebsiella pneumoniae]
GCAAGGCGACTTAGCCTGCATTAATGCCAACTTTTAGCGCACGGCTCTCTCCCAAGAGCCATTTCCCTGGACCGAATACA
GGAATCGTATTCGGTCTCTTTTT
GCAAGGCGACTTAGCCTGCATTAATGCCAACTTTTAGCGCACGGCTCTCTCCCAAGAGCCATTTCCCTGGACCGAATACA
GGAATCGTATTCGGTCTCTTTTT
Antitoxin
Download Length: 146 bp
>AT37621 NZ_AP023337:c1898145-1898000 [Klebsiella pneumoniae]
TAAAGATAAAAAGAGACCGAATACGATTCCTGTATTCGGTCCAGGGAAATGGCTCTTGGGAGAGAGCCGTGCGCTAAAAG
TTGGCATTAATGCAGGCTAAGTCGCCTTGCACTATAAGAATAGTTTAACGCGTCAGCTTTTCCAGT
TAAAGATAAAAAGAGACCGAATACGATTCCTGTATTCGGTCCAGGGAAATGGCTCTTGGGAGAGAGCCGTGCGCTAAAAG
TTGGCATTAATGCAGGCTAAGTCGCCTTGCACTATAAGAATAGTTTAACGCGTCAGCTTTTCCAGT
