Detailed information of TA system
Overview
TA module
| Type | VIII | Classification (family/domain) | SdsR-RyeA/- |
| Location | 1973075..1973346 | Replicon | chromosome |
| Accession | NZ_AP023286 | ||
| Organism | Escherichia coli strain 2018-18.25PC | ||
Toxin (RNA)
| Gene name | SdsR | ||
| Locus tag | - | ||
| Coordinates | 1973205..1973308 (+) |
Antitoxin (RNA)
| Gene name | RyeA | ||
| Locus tag | - | ||
| Coordinates | 1973075..1973346 (-) |
Genomic Context
| Locus tag | Coordinates | Strand | Size (bp) | Protein ID | Product | Description |
|---|---|---|---|---|---|---|
| JMH23_RS09355 | 1969630..1970292 | - | 663 | WP_000944258.1 | exodeoxyribonuclease X | - |
| JMH23_RS09360 | 1970316..1970972 | - | 657 | WP_000011658.1 | carbon-nitrogen hydrolase family protein | - |
| JMH23_RS09365 | 1971074..1971304 | - | 231 | WP_000916763.1 | DNA polymerase III subunit theta | - |
| JMH23_RS09370 | 1971443..1971817 | + | 375 | WP_000168747.1 | CopC domain-containing protein YobA | - |
| JMH23_RS09375 | 1971821..1972693 | + | 873 | WP_000879295.1 | copper homeostasis membrane protein CopD | - |
| JMH23_RS09380 | 1972706..1973047 | + | 342 | WP_000976472.1 | YebY family protein | - |
| - | 1973075..1973346 | - | 272 | - | - | Antitoxin |
| - | 1973205..1973308 | + | 104 | - | - | Toxin |
| JMH23_RS09385 | 1973443..1974099 | + | 657 | WP_000812732.1 | protein-serine/threonine phosphatase | - |
| JMH23_RS09390 | 1974100..1974291 | - | 192 | WP_001338167.1 | YebW family protein | - |
| JMH23_RS09395 | 1974396..1974632 | - | 237 | WP_001338166.1 | DUF1480 family protein | - |
| JMH23_RS09400 | 1974750..1976189 | - | 1440 | WP_001351758.1 | 16S rRNA (cytosine(1407)-C(5))-methyltransferase RsmF | - |
Associated MGEs
| MGE detail |
Similar MGEs |
Relative position |
MGE Type | Cargo ARG | Virulence gene | Coordinates | Length (bp) |
|---|
Relative position:
(1) inside: TA loci is completely located inside the MGE;
(2) overlap: TA loci is partially overlapped with the MGE;
(3) flank: The TA loci is located in the 5 kb flanking regions of MGE.
Sequences
Toxin
Download Length: 104 bp
>T37149 NZ_AP023286:1973205-1973308 [Escherichia coli]
GGCAAGGCAACTAAGCCTGCATTAATGCCAACTTTTAGCGCACGGCTCTCTCCCAAGAGCCATTTCCCTGGACCGAATAC
AGGAATCGTGTTCGGTCTCTTTTT
GGCAAGGCAACTAAGCCTGCATTAATGCCAACTTTTAGCGCACGGCTCTCTCCCAAGAGCCATTTCCCTGGACCGAATAC
AGGAATCGTGTTCGGTCTCTTTTT
Antitoxin
Download Length: 272 bp
>AT37149 NZ_AP023286:c1973346-1973075 [Escherichia coli]
AAAGTCAGCGAAGGAAATGCTTCTGGCTTTTAACAGATAAAAAGAGACCGAACACGATTCCTGTATTCGGTCCAGGGAAA
TGGCTCTTGGGAGAGAGCCGTGCGCTAAAAGTTGGCATTAATGCAGGCTTAGTTGCCTTGCCCTTTAAGAATAGATGACG
ACGCCAGGTTTTCCAGTTTGCGTGCAAAATGGTCAATAAAAAGCGCGGTGGTCATCAGCTTAAATGTTAAAAACCGCCCG
TTCTGGTGAAAGAACTGAGGCGGTTTTTTTAT
AAAGTCAGCGAAGGAAATGCTTCTGGCTTTTAACAGATAAAAAGAGACCGAACACGATTCCTGTATTCGGTCCAGGGAAA
TGGCTCTTGGGAGAGAGCCGTGCGCTAAAAGTTGGCATTAATGCAGGCTTAGTTGCCTTGCCCTTTAAGAATAGATGACG
ACGCCAGGTTTTCCAGTTTGCGTGCAAAATGGTCAATAAAAAGCGCGGTGGTCATCAGCTTAAATGTTAAAAACCGCCCG
TTCTGGTGAAAGAACTGAGGCGGTTTTTTTAT
