Detailed information of TA system
Bioinformatically predictedOverview
TA module
Type | II | Classification (family/domain) | vapBC/VapC(toxin) |
Location | 3077677..3078317 | Replicon | chromosome |
Accession | NZ_AP023263 | ||
Organism | Mesorhizobium sp. L-8-10 |
Toxin (Protein)
Gene name | vapC | Uniprot ID | - |
Locus tag | JN280_RS14275 | Protein ID | WP_202313019.1 |
Coordinates | 3077677..3078063 (-) | Length | 129 a.a. |
Antitoxin (Protein)
Gene name | vapB | Uniprot ID | - |
Locus tag | JN280_RS14280 | Protein ID | WP_202313020.1 |
Coordinates | 3078063..3078317 (-) | Length | 85 a.a. |
Genomic Context
Locus tag | Coordinates | Strand | Size (bp) | Protein ID | Product | Description |
---|---|---|---|---|---|---|
JN280_RS14265 | 3073906..3074838 | - | 933 | WP_202313017.1 | helix-turn-helix domain-containing protein | - |
JN280_RS14270 | 3075069..3077171 | + | 2103 | WP_202313018.1 | PQQ-dependent dehydrogenase, methanol/ethanol family | - |
JN280_RS14275 | 3077677..3078063 | - | 387 | WP_202313019.1 | type II toxin-antitoxin system VapC family toxin | Toxin |
JN280_RS14280 | 3078063..3078317 | - | 255 | WP_202313020.1 | type II toxin-antitoxin system VapB family antitoxin | Antitoxin |
JN280_RS14285 | 3078664..3080226 | - | 1563 | WP_202313021.1 | sulfatase | - |
JN280_RS14290 | 3080286..3081272 | - | 987 | WP_202313022.1 | aliphatic sulfonate ABC transporter substrate-binding protein | - |
JN280_RS14295 | 3081292..3082074 | - | 783 | WP_202314764.1 | ABC transporter ATP-binding protein | - |
JN280_RS14300 | 3082092..3082844 | - | 753 | WP_202314765.1 | ABC transporter permease | - |
Associated MGEs
MGE detail |
Similar MGEs |
Relative position |
MGE Type | Cargo ARG | Virulence gene | Coordinates | Length (bp) |
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Relative position:
(1) inside: TA loci is completely located inside the MGE;
(2) overlap: TA loci is partially overlapped with the MGE;
(3) flank: The TA loci is located in the 5 kb flanking regions of MGE.
Sequences
Toxin
Download Length: 129 a.a. Molecular weight: 13872.63 Da Isoelectric Point: 4.5833
>T37131 WP_202313019.1 NZ_AP023263:c3078063-3077677 [Mesorhizobium sp. L-8-10]
MVIDTSAIVAIALNEPEAPSFEQRIADDPVRLISAATVLEAAMVIEARFGDPGGGEFDLWLHKADVEIVAVKAEHADQAR
RAWRRYGKGRHPAGLNYGDCFSYALAALTGEPLLYKGNDFSQTDIQAA
MVIDTSAIVAIALNEPEAPSFEQRIADDPVRLISAATVLEAAMVIEARFGDPGGGEFDLWLHKADVEIVAVKAEHADQAR
RAWRRYGKGRHPAGLNYGDCFSYALAALTGEPLLYKGNDFSQTDIQAA
Download Length: 387 bp
>T37131 NZ_AP023263:c3078063-3077677 [Mesorhizobium sp. L-8-10]
ATGGTCATCGATACCTCGGCCATCGTCGCCATAGCGCTCAATGAGCCGGAAGCACCTTCCTTCGAGCAGCGCATTGCCGA
CGACCCGGTGCGCCTCATCTCTGCCGCAACCGTGCTGGAAGCGGCCATGGTGATCGAGGCCCGCTTCGGCGACCCTGGCG
GCGGCGAGTTCGACCTGTGGCTGCACAAGGCCGATGTCGAGATCGTCGCGGTCAAAGCCGAGCATGCCGACCAGGCCCGC
CGCGCCTGGAGGCGCTACGGCAAGGGCCGCCACCCAGCCGGGCTGAACTACGGCGACTGCTTCTCCTATGCACTGGCCGC
CCTGACCGGCGAGCCCCTACTCTACAAGGGCAACGACTTTTCGCAGACCGATATCCAAGCGGCGTGA
ATGGTCATCGATACCTCGGCCATCGTCGCCATAGCGCTCAATGAGCCGGAAGCACCTTCCTTCGAGCAGCGCATTGCCGA
CGACCCGGTGCGCCTCATCTCTGCCGCAACCGTGCTGGAAGCGGCCATGGTGATCGAGGCCCGCTTCGGCGACCCTGGCG
GCGGCGAGTTCGACCTGTGGCTGCACAAGGCCGATGTCGAGATCGTCGCGGTCAAAGCCGAGCATGCCGACCAGGCCCGC
CGCGCCTGGAGGCGCTACGGCAAGGGCCGCCACCCAGCCGGGCTGAACTACGGCGACTGCTTCTCCTATGCACTGGCCGC
CCTGACCGGCGAGCCCCTACTCTACAAGGGCAACGACTTTTCGCAGACCGATATCCAAGCGGCGTGA
Antitoxin
Download Length: 85 a.a. Molecular weight: 9395.62 Da Isoelectric Point: 9.9858
>AT37131 WP_202313020.1 NZ_AP023263:c3078317-3078063 [Mesorhizobium sp. L-8-10]
MALSIKDPETERLARKLATKTGESITIATRRALEERLRRVSSDARKTALLEDLAASRRRWSSLPVLDNRSADEIVGYDEN
GLPS
MALSIKDPETERLARKLATKTGESITIATRRALEERLRRVSSDARKTALLEDLAASRRRWSSLPVLDNRSADEIVGYDEN
GLPS
Download Length: 255 bp
>AT37131 NZ_AP023263:c3078317-3078063 [Mesorhizobium sp. L-8-10]
ATGGCGCTGAGCATCAAAGATCCGGAAACCGAGCGGCTCGCCCGCAAGCTCGCCACGAAAACCGGCGAGAGCATCACCAT
TGCCACACGGCGGGCGCTGGAGGAGCGGCTGCGCCGCGTCAGCTCCGACGCCCGCAAGACCGCACTTCTGGAGGATCTTG
CCGCCAGCCGCCGGCGCTGGAGTTCCCTGCCCGTCCTCGACAATCGCAGCGCCGATGAAATCGTCGGCTACGACGAGAAT
GGGCTGCCGAGCTGA
ATGGCGCTGAGCATCAAAGATCCGGAAACCGAGCGGCTCGCCCGCAAGCTCGCCACGAAAACCGGCGAGAGCATCACCAT
TGCCACACGGCGGGCGCTGGAGGAGCGGCTGCGCCGCGTCAGCTCCGACGCCCGCAAGACCGCACTTCTGGAGGATCTTG
CCGCCAGCCGCCGGCGCTGGAGTTCCCTGCCCGTCCTCGACAATCGCAGCGCCGATGAAATCGTCGGCTACGACGAGAAT
GGGCTGCCGAGCTGA
Similar Proteins
Only experimentally validated proteins are listed.
Protein | Organism | Identities (%) | Coverage (%) | Ha-value |
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Protein | Organism | Identities (%) | Coverage (%) | Ha-value |
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Structures
Toxin
Source | ID | Structure |
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Antitoxin
Source | ID | Structure |
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