Detailed information of TA system    

insolicoBioinformatically predicted

Overview

TA module


Type II Classification (family/domain) Hha-TomB/-
Location 3624648..3625266 Replicon chromosome
Accession NZ_AP023237
Organism Escherichia coli strain F070

Toxin (Protein)


Gene name Hha Uniprot ID H5UYE2
Locus tag FJI53_RS17480 Protein ID WP_001291435.1
Coordinates 3625048..3625266 (+) Length 73 a.a.

Antitoxin (Protein)


Gene name TomB Uniprot ID S1PTH5
Locus tag FJI53_RS17475 Protein ID WP_000344800.1
Coordinates 3624648..3625022 (+) Length 125 a.a.

Genomic Context

Locus tag Coordinates Strand Size (bp) Protein ID Product Description
FJI53_RS17465 3619737..3620930 + 1194 WP_001295324.1 multidrug efflux RND transporter periplasmic adaptor subunit AcrA -
FJI53_RS17470 3620953..3624102 + 3150 WP_001132469.1 multidrug efflux RND transporter permease subunit -
FJI53_RS17475 3624648..3625022 + 375 WP_000344800.1 Hha toxicity modulator TomB Antitoxin
FJI53_RS17480 3625048..3625266 + 219 WP_001291435.1 hemolysin expression modulator Hha Toxin
FJI53_RS17485 3625438..3625989 + 552 WP_000102568.1 maltose O-acetyltransferase -
FJI53_RS17490 3626105..3626575 + 471 WP_000136192.1 YlaC family protein -
FJI53_RS17495 3626739..3628289 + 1551 WP_001372022.1 cyclic-guanylate-specific phosphodiesterase PdeB -
FJI53_RS17500 3628331..3628684 - 354 WP_000878140.1 DUF1428 domain-containing protein -
FJI53_RS17510 3629063..3629374 + 312 WP_000409911.1 MGMT family protein -
FJI53_RS17515 3629405..3629977 - 573 WP_000779831.1 YbaY family lipoprotein -

Associated MGEs

MGE
detail		 Similar
MGEs		 Relative
position		 MGE Type Cargo ARG Virulence gene Coordinates Length (bp)


Relative position:
(1) inside: TA loci is completely located inside the MGE;
(2) overlap: TA loci is partially overlapped with the MGE;
(3) flank: The TA loci is located in the 5 kb flanking regions of MGE.


Domains

Predicted by InterproScan

Toxin

Haemolysin expression modulating, HHA

(13-69)

Antitoxin

Biofilm formation regulator YbaJ

(1-117)


Sequences

Toxin        


Download         Length: 73 a.a.        Molecular weight: 8628.00 Da        Isoelectric Point: 8.9008

>T37064 WP_001291435.1 NZ_AP023237:3625048-3625266 [Escherichia coli]
MSEKPLTKTDYLMRLRRCQTIDTLERVIEKNKYELSDNELAVFYSAADHRLAELTMNKLYDKIPSSVWKFIR

Download         Length: 219 bp

>T37064 NZ_AP023237:3625048-3625266 [Escherichia coli]
ATGTCCGAAAAACCTTTAACGAAAACCGATTATTTAATGCGTTTACGTCGTTGCCAGACAATTGACACGCTGGAGCGTGT
TATCGAGAAAAATAAATACGAATTATCAGATAATGAACTGGCGGTATTTTACTCAGCCGCAGATCACCGCCTCGCCGAAT
TGACCATGAATAAACTGTACGACAAGATCCCTTCCTCAGTTTGGAAATTTATTCGCTAA

Antitoxin


Download         Length: 125 a.a.        Molecular weight: 14557.39 Da        Isoelectric Point: 4.7395

>AT37064 WP_000344800.1 NZ_AP023237:3624648-3625022 [Escherichia coli]
MDEYSPKRHDIAQLKFLCETLYHDCLANLEESNHGWVNDPTSAINLQLNELIEHIATFALNYKIKYNEDNKLIEQIDEYL
DDTFMLFSSYGINMQDLQKWRKSGNRLFRCFVNATKENPASLSC

Download         Length: 375 bp

>AT37064 NZ_AP023237:3624648-3625022 [Escherichia coli]
ATGGATGAATACTCACCCAAAAGACATGATATCGCACAGCTTAAGTTTCTCTGTGAAACCCTGTATCATGACTGCCTTGC
AAACCTTGAAGAAAGCAATCATGGCTGGGTTAACGACCCAACCTCGGCGATCAACCTCCAGTTGAATGAACTGATTGAGC
ATATTGCGACCTTCGCACTTAATTACAAAATTAAGTATAATGAAGACAATAAGCTCATTGAGCAGATCGACGAATATCTG
GATGACACCTTTATGTTGTTCAGTAGTTATGGTATTAATATGCAGGATCTTCAGAAATGGCGGAAGTCAGGTAATCGACT
ATTCCGTTGTTTTGTCAATGCGACGAAAGAGAATCCTGCGAGTTTATCTTGTTAG

Similar Proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
Protein Organism Identities (%) Coverage (%) Ha-value

Structures

Toxin

Source ID Structure
PDB 2MW2
PDB 1JW2

Antitoxin

Source ID Structure
AlphaFold DB A0A7U9QBQ5

References