Detailed information of TA system
Overview
TA module
| Type | VIII | Classification (family/domain) | SdsR-RyeA/- |
| Location | 2237146..2237417 | Replicon | chromosome |
| Accession | NZ_AP023235 | ||
| Organism | Escherichia coli strain YJ6 | ||
Toxin (RNA)
| Gene name | SdsR | ||
| Locus tag | - | ||
| Coordinates | 2237276..2237379 (+) |
Antitoxin (RNA)
| Gene name | RyeA | ||
| Locus tag | - | ||
| Coordinates | 2237146..2237417 (-) |
Genomic Context
| Locus tag | Coordinates | Strand | Size (bp) | Protein ID | Product | Description |
|---|---|---|---|---|---|---|
| HXS64_RS10705 | 2233701..2234363 | - | 663 | WP_047603977.1 | exodeoxyribonuclease X | - |
| HXS64_RS10710 | 2234387..2235043 | - | 657 | WP_000011658.1 | carbon-nitrogen hydrolase family protein | - |
| HXS64_RS10715 | 2235145..2235375 | - | 231 | WP_000916763.1 | DNA polymerase III subunit theta | - |
| HXS64_RS10720 | 2235514..2235888 | + | 375 | WP_000168747.1 | CopC domain-containing protein YobA | - |
| HXS64_RS10725 | 2235892..2236764 | + | 873 | WP_000879295.1 | copper homeostasis membrane protein CopD | - |
| HXS64_RS10730 | 2236777..2237118 | + | 342 | WP_000976472.1 | YebY family protein | - |
| - | 2237146..2237417 | - | 272 | - | - | Antitoxin |
| - | 2237276..2237379 | + | 104 | - | - | Toxin |
| HXS64_RS10735 | 2237514..2238008 | + | 495 | Protein_2079 | protein-serine/threonine phosphatase | - |
| HXS64_RS10740 | 2238063..2238761 | + | 699 | Protein_2080 | IS1 family transposase | - |
| HXS64_RS10745 | 2238778..2238948 | + | 171 | Protein_2081 | serine/threonine-protein phosphatase | - |
| HXS64_RS10750 | 2238949..2239140 | - | 192 | WP_001338167.1 | YebW family protein | - |
| HXS64_RS10755 | 2239245..2239481 | - | 237 | WP_001338166.1 | DUF1480 family protein | - |
| HXS64_RS10760 | 2239599..2241038 | - | 1440 | WP_001397399.1 | 16S rRNA (cytosine(1407)-C(5))-methyltransferase RsmF | - |
Associated MGEs
| MGE detail |
Similar MGEs |
Relative position |
MGE Type | Cargo ARG | Virulence gene | Coordinates | Length (bp) |
|---|---|---|---|---|---|---|---|
| - | inside | Prophage | - | - | 2215127..2238761 | 23634 |
Relative position:
(1) inside: TA loci is completely located inside the MGE;
(2) overlap: TA loci is partially overlapped with the MGE;
(3) flank: The TA loci is located in the 5 kb flanking regions of MGE.
Sequences
Toxin
Download Length: 104 bp
>T37024 NZ_AP023235:2237276-2237379 [Escherichia coli]
GGCAAGGCAACTAAGCCTGCATTAATGCCAACTTTTAGCGCACGGCTCTCTCCCAAGAGCCATTTCCCTGGACCGAATAC
AGGAATCGTGTTCGGTCTCTTTTT
GGCAAGGCAACTAAGCCTGCATTAATGCCAACTTTTAGCGCACGGCTCTCTCCCAAGAGCCATTTCCCTGGACCGAATAC
AGGAATCGTGTTCGGTCTCTTTTT
Antitoxin
Download Length: 272 bp
>AT37024 NZ_AP023235:c2237417-2237146 [Escherichia coli]
AAAGTCAGCGAAGGAAATGCTTCTGGCTTTTAACAGATAAAAAGAGACCGAACACGATTCCTGTATTCGGTCCAGGGAAA
TGGCTCTTGGGAGAGAGCCGTGCGCTAAAAGTTGGCATTAATGCAGGCTTAGTTGCCTTGCCCTTTAAGAATAGATGACG
ACGCCAGGTTTTCCAGTTTGCGTGCAAAATGGTCAATAAAAAGCGCGGTGGTCATCAGCTTAAATGTTAAAAACCGCCCG
TTCTGGTGAAAGAACTGAGGCGGTTTTTTTAT
AAAGTCAGCGAAGGAAATGCTTCTGGCTTTTAACAGATAAAAAGAGACCGAACACGATTCCTGTATTCGGTCCAGGGAAA
TGGCTCTTGGGAGAGAGCCGTGCGCTAAAAGTTGGCATTAATGCAGGCTTAGTTGCCTTGCCCTTTAAGAATAGATGACG
ACGCCAGGTTTTCCAGTTTGCGTGCAAAATGGTCAATAAAAAGCGCGGTGGTCATCAGCTTAAATGTTAAAAACCGCCCG
TTCTGGTGAAAGAACTGAGGCGGTTTTTTTAT
