Detailed information of TA system
Overview
TA module
| Type | VIII | Classification (family/domain) | SdsR-RyeA/- |
| Location | 4249109..4249380 | Replicon | chromosome |
| Accession | NZ_AP023230 | ||
| Organism | Escherichia coli strain YJ4 | ||
Toxin (RNA)
| Gene name | SdsR | ||
| Locus tag | - | ||
| Coordinates | 4249239..4249342 (+) |
Antitoxin (RNA)
| Gene name | RyeA | ||
| Locus tag | - | ||
| Coordinates | 4249109..4249380 (-) |
Genomic Context
| Locus tag | Coordinates | Strand | Size (bp) | Protein ID | Product | Description |
|---|---|---|---|---|---|---|
| HXS62_RS20265 | 4245664..4246326 | - | 663 | WP_000944256.1 | exodeoxyribonuclease X | - |
| HXS62_RS20270 | 4246350..4247006 | - | 657 | WP_000011658.1 | carbon-nitrogen hydrolase family protein | - |
| HXS62_RS20275 | 4247108..4247338 | - | 231 | WP_000916763.1 | DNA polymerase III subunit theta | - |
| HXS62_RS20280 | 4247477..4247851 | + | 375 | WP_000168747.1 | CopC domain-containing protein YobA | - |
| HXS62_RS20285 | 4247855..4248727 | + | 873 | WP_000879289.1 | copper homeostasis membrane protein CopD | - |
| HXS62_RS20290 | 4248740..4249081 | + | 342 | WP_000976476.1 | YebY family protein | - |
| - | 4249109..4249380 | - | 272 | - | - | Antitoxin |
| - | 4249239..4249342 | + | 104 | - | - | Toxin |
| HXS62_RS20295 | 4249477..4250133 | + | 657 | WP_000812724.1 | protein-serine/threonine phosphatase | - |
| HXS62_RS20300 | 4250134..4250325 | - | 192 | WP_000457842.1 | YebW family protein | - |
| HXS62_RS20305 | 4250430..4250666 | - | 237 | WP_001295499.1 | DUF1480 family protein | - |
| HXS62_RS20310 | 4250784..4252223 | - | 1440 | WP_001352260.1 | 16S rRNA (cytosine(1407)-C(5))-methyltransferase RsmF | - |
Associated MGEs
| MGE detail |
Similar MGEs |
Relative position |
MGE Type | Cargo ARG | Virulence gene | Coordinates | Length (bp) |
|---|
Relative position:
(1) inside: TA loci is completely located inside the MGE;
(2) overlap: TA loci is partially overlapped with the MGE;
(3) flank: The TA loci is located in the 5 kb flanking regions of MGE.
Sequences
Toxin
Download Length: 104 bp
>T37001 NZ_AP023230:4249239-4249342 [Escherichia coli]
GGCAAGGCAACTAAGCCTGCATTAATGCCAACTTTTAGCGCACGGCTCTCTCCCAAGAGCCATTTCCCTGGACCGAATAC
AGGAATCGTGTTCGGTCTCTTTTT
GGCAAGGCAACTAAGCCTGCATTAATGCCAACTTTTAGCGCACGGCTCTCTCCCAAGAGCCATTTCCCTGGACCGAATAC
AGGAATCGTGTTCGGTCTCTTTTT
Antitoxin
Download Length: 272 bp
>AT37001 NZ_AP023230:c4249380-4249109 [Escherichia coli]
AAAGTCAGCGAAGGAAATGCTTCTGGCTTTTAACAGATAAAAAGAGACCGAACACGATTCCTGTATTCGGTCCAGGGAAA
TGGCTCTTGGGAGAGAGCCGTGCGCTAAAAGTTGGCATTAATGCAGGCTTAGTTGCCTTGCCCTTTAAGAATAGATGACG
ACGCCAGGTTTTCCAGTTTGCGTGCAAAATGGTCAATAAAAAGCGTGGTGGTCATCAGCTGAAATGTTAAAAACCGCCCG
TTCTGGTGAAAGAACTGAGGCGGTTTTTTTAT
AAAGTCAGCGAAGGAAATGCTTCTGGCTTTTAACAGATAAAAAGAGACCGAACACGATTCCTGTATTCGGTCCAGGGAAA
TGGCTCTTGGGAGAGAGCCGTGCGCTAAAAGTTGGCATTAATGCAGGCTTAGTTGCCTTGCCCTTTAAGAATAGATGACG
ACGCCAGGTTTTCCAGTTTGCGTGCAAAATGGTCAATAAAAAGCGTGGTGGTCATCAGCTGAAATGTTAAAAACCGCCCG
TTCTGGTGAAAGAACTGAGGCGGTTTTTTTAT
