Detailed information of TA system
Overview
TA module
| Type | VIII | Classification (family/domain) | SdsR-RyeA/- |
| Location | 2095840..2096111 | Replicon | chromosome |
| Accession | NZ_AP023224 | ||
| Organism | Escherichia coli strain YJ1 | ||
Toxin (RNA)
| Gene name | SdsR | ||
| Locus tag | - | ||
| Coordinates | 2095970..2096073 (+) |
Antitoxin (RNA)
| Gene name | RyeA | ||
| Locus tag | - | ||
| Coordinates | 2095840..2096111 (-) |
Genomic Context
| Locus tag | Coordinates | Strand | Size (bp) | Protein ID | Product | Description |
|---|---|---|---|---|---|---|
| HXS59_RS10060 | 2092395..2093057 | - | 663 | WP_000944256.1 | exodeoxyribonuclease X | - |
| HXS59_RS10065 | 2093081..2093737 | - | 657 | WP_000011658.1 | carbon-nitrogen hydrolase family protein | - |
| HXS59_RS10070 | 2093839..2094069 | - | 231 | WP_000916763.1 | DNA polymerase III subunit theta | - |
| HXS59_RS10075 | 2094208..2094582 | + | 375 | WP_000204699.1 | CopC domain-containing protein YobA | - |
| HXS59_RS10080 | 2094586..2095458 | + | 873 | WP_000879280.1 | copper homeostasis membrane protein CopD | - |
| HXS59_RS10085 | 2095471..2095812 | + | 342 | WP_000976492.1 | YebY family protein | - |
| - | 2095840..2096111 | - | 272 | - | - | Antitoxin |
| - | 2095970..2096073 | + | 104 | - | - | Toxin |
| HXS59_RS10090 | 2096208..2096864 | + | 657 | WP_000812724.1 | protein-serine/threonine phosphatase | - |
| HXS59_RS10095 | 2096865..2097056 | - | 192 | WP_001296140.1 | YebW family protein | - |
| HXS59_RS10100 | 2097161..2097397 | - | 237 | WP_001295499.1 | DUF1480 family protein | - |
| HXS59_RS10105 | 2097515..2098954 | - | 1440 | WP_000057023.1 | 16S rRNA (cytosine(1407)-C(5))-methyltransferase RsmF | - |
Associated MGEs
| MGE detail |
Similar MGEs |
Relative position |
MGE Type | Cargo ARG | Virulence gene | Coordinates | Length (bp) |
|---|---|---|---|---|---|---|---|
| - | inside | Prophage | - | - | 2058795..2111949 | 53154 |
Relative position:
(1) inside: TA loci is completely located inside the MGE;
(2) overlap: TA loci is partially overlapped with the MGE;
(3) flank: The TA loci is located in the 5 kb flanking regions of MGE.
Sequences
Toxin
Download Length: 104 bp
>T36932 NZ_AP023224:2095970-2096073 [Escherichia coli]
GGCAAGGCAACTAAGCCTGCATTAATGCCAACTTTTAGCGCACGGCTCTCTCCCAAGAGCCATTTCCCTGGACCGAATAC
AGGAATCGTGTTCGGTCTCTTTTT
GGCAAGGCAACTAAGCCTGCATTAATGCCAACTTTTAGCGCACGGCTCTCTCCCAAGAGCCATTTCCCTGGACCGAATAC
AGGAATCGTGTTCGGTCTCTTTTT
Antitoxin
Download Length: 272 bp
>AT36932 NZ_AP023224:c2096111-2095840 [Escherichia coli]
AAAGTCAGCGAAGGAAATGCTTCTGGCTTTTAACAGATAAAAAGAGACCGAACACGATTCCTGTATTCGGTCCAGGGAAA
TGGCTCTTGGGAGAGAGCCGTGCGCTAAAAGTTGGCATTAATGCAGGCTTAGTTGCCTTGCCCTTTAAGAATAGATGACG
ACGCCAGGTTTTCCAGTTTGCGTGCAAAATGGTCAATAAAAAGCGTGGTGGTCATCAGCTGAAATGTTAAAAACCGCCCG
TTCTGGTGAAAGAACTGAGGCGGTTTTTTTAT
AAAGTCAGCGAAGGAAATGCTTCTGGCTTTTAACAGATAAAAAGAGACCGAACACGATTCCTGTATTCGGTCCAGGGAAA
TGGCTCTTGGGAGAGAGCCGTGCGCTAAAAGTTGGCATTAATGCAGGCTTAGTTGCCTTGCCCTTTAAGAATAGATGACG
ACGCCAGGTTTTCCAGTTTGCGTGCAAAATGGTCAATAAAAAGCGTGGTGGTCATCAGCTGAAATGTTAAAAACCGCCCG
TTCTGGTGAAAGAACTGAGGCGGTTTTTTTAT
