Detailed information of TA system
Overview
TA module
| Type | VIII | Classification (family/domain) | SdsR-RyeA/- |
| Location | 1771942..1772213 | Replicon | chromosome |
| Accession | NZ_AP023219 | ||
| Organism | Escherichia coli strain M505 | ||
Toxin (RNA)
| Gene name | SdsR | ||
| Locus tag | - | ||
| Coordinates | 1771980..1772083 (-) |
Antitoxin (RNA)
| Gene name | RyeA | ||
| Locus tag | - | ||
| Coordinates | 1771942..1772213 (+) |
Genomic Context
| Locus tag | Coordinates | Strand | Size (bp) | Protein ID | Product | Description |
|---|---|---|---|---|---|---|
| EPG46_RS08490 | 1769099..1770538 | + | 1440 | WP_001352260.1 | 16S rRNA (cytosine(1407)-C(5))-methyltransferase RsmF | - |
| EPG46_RS08495 | 1770656..1770892 | + | 237 | WP_001295499.1 | DUF1480 family protein | - |
| EPG46_RS08500 | 1770997..1771188 | + | 192 | WP_000457842.1 | YebW family protein | - |
| EPG46_RS08505 | 1771189..1771845 | - | 657 | WP_000812724.1 | protein-serine/threonine phosphatase | - |
| - | 1771942..1772213 | + | 272 | - | - | Antitoxin |
| - | 1771980..1772083 | - | 104 | - | - | Toxin |
| EPG46_RS08510 | 1772241..1772582 | - | 342 | WP_000976476.1 | YebY family protein | - |
| EPG46_RS08515 | 1772595..1773467 | - | 873 | WP_000879289.1 | copper homeostasis membrane protein CopD | - |
| EPG46_RS08520 | 1773471..1773845 | - | 375 | WP_000168747.1 | CopC domain-containing protein YobA | - |
| EPG46_RS08525 | 1773984..1774214 | + | 231 | WP_000916763.1 | DNA polymerase III subunit theta | - |
| EPG46_RS08530 | 1774316..1774972 | + | 657 | WP_000011658.1 | carbon-nitrogen hydrolase family protein | - |
| EPG46_RS08535 | 1774996..1775658 | + | 663 | WP_000944256.1 | exodeoxyribonuclease X | - |
Associated MGEs
| MGE detail |
Similar MGEs |
Relative position |
MGE Type | Cargo ARG | Virulence gene | Coordinates | Length (bp) |
|---|
Relative position:
(1) inside: TA loci is completely located inside the MGE;
(2) overlap: TA loci is partially overlapped with the MGE;
(3) flank: The TA loci is located in the 5 kb flanking regions of MGE.
Sequences
Toxin
Download Length: 104 bp
>T36893 NZ_AP023219:c1772083-1771980 [Escherichia coli]
GGCAAGGCAACTAAGCCTGCATTAATGCCAACTTTTAGCGCACGGCTCTCTCCCAAGAGCCATTTCCCTGGACCGAATAC
AGGAATCGTGTTCGGTCTCTTTTT
GGCAAGGCAACTAAGCCTGCATTAATGCCAACTTTTAGCGCACGGCTCTCTCCCAAGAGCCATTTCCCTGGACCGAATAC
AGGAATCGTGTTCGGTCTCTTTTT
Antitoxin
Download Length: 272 bp
>AT36893 NZ_AP023219:1771942-1772213 [Escherichia coli]
AAAGTCAGCGAAGGAAATGCTTCTGGCTTTTAACAGATAAAAAGAGACCGAACACGATTCCTGTATTCGGTCCAGGGAAA
TGGCTCTTGGGAGAGAGCCGTGCGCTAAAAGTTGGCATTAATGCAGGCTTAGTTGCCTTGCCCTTTAAGAATAGATGACG
ACGCCAGGTTTTCCAGTTTGCGTGCAAAATGGTCAATAAAAAGCGTGGTGGTCATCAGCTGAAATGTTAAAAACCGCCCG
TTCTGGTGAAAGAACTGAGGCGGTTTTTTTAT
AAAGTCAGCGAAGGAAATGCTTCTGGCTTTTAACAGATAAAAAGAGACCGAACACGATTCCTGTATTCGGTCCAGGGAAA
TGGCTCTTGGGAGAGAGCCGTGCGCTAAAAGTTGGCATTAATGCAGGCTTAGTTGCCTTGCCCTTTAAGAATAGATGACG
ACGCCAGGTTTTCCAGTTTGCGTGCAAAATGGTCAATAAAAAGCGTGGTGGTCATCAGCTGAAATGTTAAAAACCGCCCG
TTCTGGTGAAAGAACTGAGGCGGTTTTTTTAT
