Detailed information of TA system    

insolicoBioinformatically predicted

Overview


TA module


Type II Classification (family/domain) itaRT/DUF1778(antitoxin)
Location 4026589..4027426 Replicon chromosome
Accession NZ_AP023205
Organism Escherichia coli strain TUM18781

Toxin (Protein)


Gene name itaT Uniprot ID Q3Z4X7
Locus tag HUV20_RS19175 Protein ID WP_000227784.1
Coordinates 4026884..4027426 (+) Length 181 a.a.

Antitoxin (Protein)


Gene name itaR Uniprot ID I2UQS9
Locus tag HUV20_RS19170 Protein ID WP_001297137.1
Coordinates 4026589..4026900 (+) Length 104 a.a.

Genomic Context


Locus tag Coordinates Strand Size (bp) Protein ID Product Description
HUV20_RS19145 4021609..4022556 + 948 WP_001239441.1 cytochrome o ubiquinol oxidase subunit II -
HUV20_RS19150 4022578..4024569 + 1992 WP_000467180.1 cytochrome o ubiquinol oxidase subunit I -
HUV20_RS19155 4024559..4025173 + 615 WP_000179819.1 cytochrome o ubiquinol oxidase subunit III -
HUV20_RS19160 4025173..4025502 + 330 WP_000019869.1 cytochrome o ubiquinol oxidase subunit IV -
HUV20_RS19165 4025514..4026404 + 891 WP_000971336.1 heme o synthase -
HUV20_RS19170 4026589..4026900 + 312 WP_001297137.1 DUF1778 domain-containing protein Antitoxin
HUV20_RS19175 4026884..4027426 + 543 WP_000227784.1 GNAT family N-acetyltransferase Toxin
HUV20_RS19180 4027482..4028417 - 936 Protein_3733 sel1 repeat family protein -
HUV20_RS19185 4028825..4030189 + 1365 WP_001000978.1 MFS transporter -
HUV20_RS19190 4030317..4030808 - 492 WP_001138904.1 nucleotide binding protein YajQ -
HUV20_RS19195 4030976..4031887 + 912 WP_000705874.1 2-dehydropantoate 2-reductase -

Associated MGEs


MGE
detail
Similar
MGEs
Relative
position
MGE Type Cargo ARG Virulence gene Coordinates Length (bp)


Relative position:
(1) inside: TA loci is completely located inside the MGE;
(2) overlap: TA loci is partially overlapped with the MGE;
(3) flank: The TA loci is located in the 5 kb flanking regions of MGE.


Domains


Predicted by InterproScan

Toxin

(68-156)

Antitoxin

(14-97)


Sequences


Toxin        


Download         Length: 181 a.a.        Molecular weight: 19805.02 Da        Isoelectric Point: 8.3395

>T36877 WP_000227784.1 NZ_AP023205:4026884-4027426 [Escherichia coli]
MVDKHEEITLPIVLSCNYQSDITYPGQKQFDCGNPVIDKFVRASLKKSVRNSDCAAKALIDRQSGELIGICTFTAYSLEK
QRVSGVLQGSQPSEIGVVRLVMLGVARKYQKRGFGQDLLCDFFEHVKIIHQALPIKGVYLDADPAAINFYARLGFVQLSA
TPNAFGAVPMFLAIQHILAA

Download         Length: 543 bp

>T36877 NZ_AP023205:4026884-4027426 [Escherichia coli]
ATGGTCGACAAGCATGAAGAGATTACTCTGCCCATAGTCCTCTCCTGTAATTATCAGTCTGATATTACTTATCCTGGGCA
AAAACAGTTTGATTGCGGTAACCCTGTTATCGATAAATTTGTACGCGCATCGCTAAAGAAAAGTGTGCGTAATAGCGACT
GTGCGGCTAAAGCACTTATTGACAGACAAAGTGGTGAACTGATCGGCATCTGTACTTTTACGGCATATTCGCTGGAAAAA
CAACGCGTTTCTGGCGTCCTTCAGGGTTCACAACCTTCAGAAATTGGTGTTGTCAGATTAGTCATGTTGGGGGTAGCACG
GAAGTATCAAAAGCGGGGCTTTGGTCAGGACCTACTATGTGATTTTTTTGAACATGTAAAAATAATTCACCAGGCATTAC
CAATTAAAGGGGTTTATCTTGATGCTGACCCTGCCGCCATTAATTTTTATGCTCGTCTCGGCTTTGTTCAGCTTTCAGCG
ACACCAAATGCTTTTGGTGCTGTACCTATGTTTTTGGCGATTCAGCATATTCTCGCGGCTTAG

Antitoxin


Download         Length: 104 a.a.        Molecular weight: 11358.04 Da        Isoelectric Point: 10.4825

>AT36877 WP_001297137.1 NZ_AP023205:4026589-4026900 [Escherichia coli]
MPGKTATLPDVDKTLKNARVELKTSPDAKNKLREAAQAVGVDLSAFILSAAMERAESVLDNQRRRELSNQSWELMNQLIA
EPAQPTLALKALMKRKNSDGRQA

Download         Length: 312 bp

>AT36877 NZ_AP023205:4026589-4026900 [Escherichia coli]
ATGCCTGGAAAAACAGCCACTCTACCCGATGTCGATAAAACGCTGAAAAATGCGCGGGTCGAACTCAAAACTAGTCCCGA
TGCCAAAAACAAACTTCGTGAAGCTGCGCAAGCCGTTGGGGTAGATTTAAGCGCTTTTATTTTGAGCGCTGCTATGGAAC
GCGCCGAAAGTGTGCTTGATAACCAACGTCGCCGTGAGCTTTCGAATCAAAGCTGGGAACTGATGAACCAACTCATCGCT
GAACCTGCTCAACCGACGCTCGCCCTCAAGGCGTTAATGAAAAGGAAAAACAGCGATGGTCGACAAGCATGA

Similar Proteins


Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
Protein Organism Identities (%) Coverage (%) Ha-value

Structures


Toxin

Source ID Structure
PDB 7BYY


Antitoxin

Source ID Structure
AlphaFold DB A0A0E0Y6B3

References