Detailed information of TA system
Overview
TA module
| Type | VIII | Classification (family/domain) | SdsR-RyeA/- |
| Location | 2569783..2570054 | Replicon | chromosome |
| Accession | NZ_AP023205 | ||
| Organism | Escherichia coli strain TUM18781 | ||
Toxin (RNA)
| Gene name | SdsR | ||
| Locus tag | - | ||
| Coordinates | 2569913..2570016 (+) |
Antitoxin (RNA)
| Gene name | RyeA | ||
| Locus tag | - | ||
| Coordinates | 2569783..2570054 (-) |
Genomic Context
| Locus tag | Coordinates | Strand | Size (bp) | Protein ID | Product | Description |
|---|---|---|---|---|---|---|
| HUV20_RS12195 | 2566338..2567000 | - | 663 | WP_000944256.1 | exodeoxyribonuclease X | - |
| HUV20_RS12200 | 2567024..2567680 | - | 657 | WP_000011658.1 | carbon-nitrogen hydrolase family protein | - |
| HUV20_RS12205 | 2567782..2568012 | - | 231 | WP_000916763.1 | DNA polymerase III subunit theta | - |
| HUV20_RS12210 | 2568151..2568525 | + | 375 | WP_000204700.1 | CopC domain-containing protein YobA | - |
| HUV20_RS12215 | 2568529..2569401 | + | 873 | WP_000879280.1 | copper homeostasis membrane protein CopD | - |
| HUV20_RS12220 | 2569414..2569755 | + | 342 | WP_000976472.1 | YebY family protein | - |
| - | 2569783..2570054 | - | 272 | - | - | Antitoxin |
| - | 2569913..2570016 | + | 104 | - | - | Toxin |
| HUV20_RS12225 | 2570151..2570807 | + | 657 | WP_000812712.1 | protein-serine/threonine phosphatase | - |
| HUV20_RS12230 | 2570808..2570999 | - | 192 | WP_001296140.1 | YebW family protein | - |
| HUV20_RS12235 | 2571104..2571340 | - | 237 | WP_001295499.1 | DUF1480 family protein | - |
| HUV20_RS12240 | 2571458..2572897 | - | 1440 | WP_001307251.1 | 16S rRNA (cytosine(1407)-C(5))-methyltransferase RsmF | - |
Associated MGEs
| MGE detail |
Similar MGEs |
Relative position |
MGE Type | Cargo ARG | Virulence gene | Coordinates | Length (bp) |
|---|
Relative position:
(1) inside: TA loci is completely located inside the MGE;
(2) overlap: TA loci is partially overlapped with the MGE;
(3) flank: The TA loci is located in the 5 kb flanking regions of MGE.
Sequences
Toxin
Download Length: 104 bp
>T36867 NZ_AP023205:2569913-2570016 [Escherichia coli]
GGCAAGGCAACTAAGCCTGCATTAATGCCAACTTTTAGCGCACGGCTCTCTCCCAAGAGCCATTTCCCTGGACCGAATAC
AGGAATCGTGTTCGGTCTCTTTTT
GGCAAGGCAACTAAGCCTGCATTAATGCCAACTTTTAGCGCACGGCTCTCTCCCAAGAGCCATTTCCCTGGACCGAATAC
AGGAATCGTGTTCGGTCTCTTTTT
Antitoxin
Download Length: 272 bp
>AT36867 NZ_AP023205:c2570054-2569783 [Escherichia coli]
AAAGTCAGCGAAGGAAATGCTTCTGGCTTTTAACAGATAAAAAGAGACCGAACACGATTCCTGTATTCGGTCCAGGGAAA
TGGCTCTTGGGAGAGAGCCGTGCGCTAAAAGTTGGCATTAATGCAGGCTTAGTTGCCTTGCCCTTTAAGAATAGATGACG
ACGCCAGGTTTTCCAGTTTGCGTGCAAAATGGTCAATAAAAAGCGTGGTGGTCATCAGCTGAAATGTTAAAAACCGCCCG
TTCTGGTGAAAGAACTGAGGCGGTTTTTTTAT
AAAGTCAGCGAAGGAAATGCTTCTGGCTTTTAACAGATAAAAAGAGACCGAACACGATTCCTGTATTCGGTCCAGGGAAA
TGGCTCTTGGGAGAGAGCCGTGCGCTAAAAGTTGGCATTAATGCAGGCTTAGTTGCCTTGCCCTTTAAGAATAGATGACG
ACGCCAGGTTTTCCAGTTTGCGTGCAAAATGGTCAATAAAAAGCGTGGTGGTCATCAGCTGAAATGTTAAAAACCGCCCG
TTCTGGTGAAAGAACTGAGGCGGTTTTTTTAT
