Detailed information of TA system
Overview
TA module
| Type | VIII | Classification (family/domain) | SdsR-RyeA/- |
| Location | 1999025..1999296 | Replicon | chromosome |
| Accession | NZ_AP023190 | ||
| Organism | Escherichia coli strain TUM18530 | ||
Toxin (RNA)
| Gene name | SdsR | ||
| Locus tag | - | ||
| Coordinates | 1999155..1999258 (+) |
Antitoxin (RNA)
| Gene name | RyeA | ||
| Locus tag | - | ||
| Coordinates | 1999025..1999296 (-) |
Genomic Context
| Locus tag | Coordinates | Strand | Size (bp) | Protein ID | Product | Description |
|---|---|---|---|---|---|---|
| HUV24_RS09415 | 1995580..1996242 | - | 663 | WP_000944256.1 | exodeoxyribonuclease X | - |
| HUV24_RS09420 | 1996266..1996922 | - | 657 | WP_000011660.1 | carbon-nitrogen hydrolase family protein | - |
| HUV24_RS09425 | 1997024..1997254 | - | 231 | WP_000916763.1 | DNA polymerase III subunit theta | - |
| HUV24_RS09430 | 1997393..1997767 | + | 375 | WP_021556896.1 | CopC domain-containing protein YobA | - |
| HUV24_RS09435 | 1997771..1998643 | + | 873 | WP_000879298.1 | copper homeostasis membrane protein CopD | - |
| HUV24_RS09440 | 1998656..1998997 | + | 342 | WP_000976472.1 | YebY family protein | - |
| - | 1999025..1999296 | - | 272 | - | - | Antitoxin |
| - | 1999155..1999258 | + | 104 | - | - | Toxin |
| HUV24_RS09445 | 1999393..2000049 | + | 657 | WP_021556895.1 | protein-serine/threonine phosphatase | - |
| HUV24_RS09450 | 2000050..2000241 | - | 192 | WP_001313035.1 | YebW family protein | - |
| HUV24_RS09455 | 2000346..2000582 | - | 237 | WP_001295499.1 | DUF1480 family protein | - |
| HUV24_RS09460 | 2000700..2002139 | - | 1440 | WP_024227172.1 | 16S rRNA (cytosine(1407)-C(5))-methyltransferase RsmF | - |
Associated MGEs
| MGE detail |
Similar MGEs |
Relative position |
MGE Type | Cargo ARG | Virulence gene | Coordinates | Length (bp) |
|---|
Relative position:
(1) inside: TA loci is completely located inside the MGE;
(2) overlap: TA loci is partially overlapped with the MGE;
(3) flank: The TA loci is located in the 5 kb flanking regions of MGE.
Sequences
Toxin
Download Length: 104 bp
>T36799 NZ_AP023190:1999155-1999258 [Escherichia coli]
GGCAAGGCAACTAAGCCTGCATTAATGCCAACTTTTAGCGCACGGCTCTCTCCCAAGAGCCATTTCCCTGGACCGAATAC
AGGAATCGTGTTCGGTCTCTTTTT
GGCAAGGCAACTAAGCCTGCATTAATGCCAACTTTTAGCGCACGGCTCTCTCCCAAGAGCCATTTCCCTGGACCGAATAC
AGGAATCGTGTTCGGTCTCTTTTT
Antitoxin
Download Length: 272 bp
>AT36799 NZ_AP023190:c1999296-1999025 [Escherichia coli]
AAAGTCAGCGAAGGAAATGCTTCTGGCTTTTAACAGATAAAAAGAGACCGAACACGATTCCTGTATTCGGTCCAGGGAAA
TGGCTCTTGGGAGAGAGCCGTGCGCTAAAAGTTGGCATTAATGCAGGCTTAGTTGCCTTGCCCTTTAAGAATAGATGACG
ACGCCAGGTTTTCCAGTTTGCGTGCAAAATGGTCAATAAAAAGCGCGGTGGTCATCAGCTTAAATGTTAAAAACCGCCCG
TTCTGGTGAAAGAACTGAGGCGGTTTTTTTAT
AAAGTCAGCGAAGGAAATGCTTCTGGCTTTTAACAGATAAAAAGAGACCGAACACGATTCCTGTATTCGGTCCAGGGAAA
TGGCTCTTGGGAGAGAGCCGTGCGCTAAAAGTTGGCATTAATGCAGGCTTAGTTGCCTTGCCCTTTAAGAATAGATGACG
ACGCCAGGTTTTCCAGTTTGCGTGCAAAATGGTCAATAAAAAGCGCGGTGGTCATCAGCTTAAATGTTAAAAACCGCCCG
TTCTGGTGAAAGAACTGAGGCGGTTTTTTTAT
