Detailed information of TA system
Overview
TA module
| Type | VIII | Classification (family/domain) | SdsR-RyeA/- |
| Location | 1898690..1898835 | Replicon | chromosome |
| Accession | NZ_AP023184 | ||
| Organism | Buttiauxella agrestis strain DSM 9389 | ||
Toxin (RNA)
| Gene name | SdsR | ||
| Locus tag | - | ||
| Coordinates | 1898725..1898829 (+) |
Antitoxin (RNA)
| Gene name | RyeA | ||
| Locus tag | - | ||
| Coordinates | 1898690..1898835 (-) |
Genomic Context
| Locus tag | Coordinates | Strand | Size (bp) | Protein ID | Product | Description |
|---|---|---|---|---|---|---|
| BADSM9389_RS08850 | 1894998..1895660 | - | 663 | WP_115628160.1 | exodeoxyribonuclease X | - |
| BADSM9389_RS08855 | 1895699..1896430 | - | 732 | WP_172893897.1 | carbon-nitrogen hydrolase family protein | - |
| BADSM9389_RS08860 | 1896563..1896793 | - | 231 | WP_034495983.1 | DNA polymerase III subunit theta | - |
| BADSM9389_RS08865 | 1896952..1897326 | + | 375 | WP_034495982.1 | CopC domain-containing protein YobA | - |
| BADSM9389_RS08870 | 1897332..1898204 | + | 873 | WP_172893898.1 | copper homeostasis membrane protein CopD | - |
| BADSM9389_RS08875 | 1898231..1898572 | + | 342 | WP_172893899.1 | YebY family protein | - |
| - | 1898690..1898835 | - | 146 | - | - | Antitoxin |
| - | 1898725..1898829 | + | 105 | - | - | Toxin |
| BADSM9389_RS08880 | 1899097..1900011 | - | 915 | WP_172893900.1 | transporter substrate-binding domain-containing protein | - |
| BADSM9389_RS08885 | 1900324..1901814 | + | 1491 | WP_172893901.1 | SulP family inorganic anion transporter | - |
| BADSM9389_RS08890 | 1902143..1902670 | + | 528 | WP_172893902.1 | GNAT family N-acetyltransferase | - |
| BADSM9389_RS08895 | 1902726..1903370 | + | 645 | WP_034495976.1 | metallophosphoesterase | - |
| BADSM9389_RS08900 | 1903403..1903594 | - | 192 | WP_034495974.1 | YebW family protein | - |
Associated MGEs
| MGE detail |
Similar MGEs |
Relative position |
MGE Type | Cargo ARG | Virulence gene | Coordinates | Length (bp) |
|---|
Relative position:
(1) inside: TA loci is completely located inside the MGE;
(2) overlap: TA loci is partially overlapped with the MGE;
(3) flank: The TA loci is located in the 5 kb flanking regions of MGE.
Sequences
Toxin
Download Length: 105 bp
>T36771 NZ_AP023184:1898725-1898829 [Buttiauxella agrestis]
GGCAAGGCGAAGTCTGCCTGCATTAATGCCAACTTTTAGCGCACGGCTCTCTCCCAAGAGCCATTTCCCTGGACCGAATA
TAGGAATCGTATTCGGTCTTTTTTT
GGCAAGGCGAAGTCTGCCTGCATTAATGCCAACTTTTAGCGCACGGCTCTCTCCCAAGAGCCATTTCCCTGGACCGAATA
TAGGAATCGTATTCGGTCTTTTTTT
Antitoxin
Download Length: 146 bp
>AT36771 NZ_AP023184:c1898835-1898690 [Buttiauxella agrestis]
ACAGATAAAAAAAGACCGAATACGATTCCTATATTCGGTCCAGGGAAATGGCTCTTGGGAGAGAGCCGTGCGCTAAAAGT
TGGCATTAATGCAGGCAGACTTCGCCTTGCCTTCTAAGAATAGATTACCGGCGCAGCTTTTCCAGT
ACAGATAAAAAAAGACCGAATACGATTCCTATATTCGGTCCAGGGAAATGGCTCTTGGGAGAGAGCCGTGCGCTAAAAGT
TGGCATTAATGCAGGCAGACTTCGCCTTGCCTTCTAAGAATAGATTACCGGCGCAGCTTTTCCAGT
