Detailed information of TA system
Overview
TA module
| Type | VIII | Classification (family/domain) | SdsR-RyeA/- |
| Location | 1830925..1831070 | Replicon | chromosome |
| Accession | NZ_AP023148 | ||
| Organism | Klebsiella pneumoniae strain SMKP03 | ||
Toxin (RNA)
| Gene name | SdsR | ||
| Locus tag | - | ||
| Coordinates | 1830961..1831063 (+) |
Antitoxin (RNA)
| Gene name | RyeA | ||
| Locus tag | - | ||
| Coordinates | 1830925..1831070 (-) |
Genomic Context
| Locus tag | Coordinates | Strand | Size (bp) | Protein ID | Product | Description |
|---|---|---|---|---|---|---|
| SMKP03_RS08850 | 1826055..1828115 | + | 2061 | WP_048289976.1 | oligopeptidase B | - |
| SMKP03_RS08855 | 1828119..1828778 | - | 660 | WP_002911407.1 | exodeoxyribonuclease X | - |
| SMKP03_RS08860 | 1828857..1829087 | - | 231 | WP_002911406.1 | DNA polymerase III subunit theta | - |
| SMKP03_RS08865 | 1829200..1829574 | + | 375 | WP_004151448.1 | CopC domain-containing protein YobA | - |
| SMKP03_RS08870 | 1829578..1830447 | + | 870 | WP_004189267.1 | copper homeostasis membrane protein CopD | - |
| SMKP03_RS08875 | 1830464..1830802 | + | 339 | WP_016529031.1 | YebY family protein | - |
| - | 1830925..1831070 | - | 146 | - | - | Antitoxin |
| - | 1830961..1831063 | + | 103 | - | - | Toxin |
| SMKP03_RS08880 | 1831437..1831580 | - | 144 | WP_002911398.1 | Ecr family regulatory small membrane protein | - |
| SMKP03_RS08885 | 1831685..1832653 | - | 969 | WP_004151446.1 | VirK/YbjX family protein | - |
| SMKP03_RS08890 | 1832810..1833463 | + | 654 | WP_020802220.1 | protein-serine/threonine phosphatase | - |
| SMKP03_RS08895 | 1833460..1833651 | - | 192 | WP_002911395.1 | YebW family protein | - |
| SMKP03_RS08900 | 1833749..1833988 | - | 240 | WP_002911393.1 | YebV family protein | - |
| SMKP03_RS08905 | 1834104..1835537 | - | 1434 | WP_004148845.1 | 16S rRNA (cytosine(1407)-C(5))-methyltransferase RsmF | - |
Associated MGEs
| MGE detail |
Similar MGEs |
Relative position |
MGE Type | Cargo ARG | Virulence gene | Coordinates | Length (bp) |
|---|
Relative position:
(1) inside: TA loci is completely located inside the MGE;
(2) overlap: TA loci is partially overlapped with the MGE;
(3) flank: The TA loci is located in the 5 kb flanking regions of MGE.
Sequences
Toxin
Download Length: 103 bp
>T36742 NZ_AP023148:1830961-1831063 [Klebsiella pneumoniae]
GCAAGGCGACTTAGCCTGCATTAATGCCAACTTTTAGCGCACGGCTCTCTCCCAAGAGCCATTTCCCTGGACCGAATACA
GGAATCGTATTCGGTCTCTTTTT
GCAAGGCGACTTAGCCTGCATTAATGCCAACTTTTAGCGCACGGCTCTCTCCCAAGAGCCATTTCCCTGGACCGAATACA
GGAATCGTATTCGGTCTCTTTTT
Antitoxin
Download Length: 146 bp
>AT36742 NZ_AP023148:c1831070-1830925 [Klebsiella pneumoniae]
TAAAGATAAAAAGAGACCGAATACGATTCCTGTATTCGGTCCAGGGAAATGGCTCTTGGGAGAGAGCCGTGCGCTAAAAG
TTGGCATTAATGCAGGCTAAGTCGCCTTGCACTATAAGAATAGTTTAACGCGTCAGCTTTTCCAGT
TAAAGATAAAAAGAGACCGAATACGATTCCTGTATTCGGTCCAGGGAAATGGCTCTTGGGAGAGAGCCGTGCGCTAAAAG
TTGGCATTAATGCAGGCTAAGTCGCCTTGCACTATAAGAATAGTTTAACGCGTCAGCTTTTCCAGT
