Detailed information of TA system    

insolicoBioinformatically predicted

Overview

TA module


Type II Classification (family/domain) relBE/RelE-Phd
Location 7330253..7330844 Replicon chromosome
Accession NZ_AP022871
Organism Phytohabitans suffuscus strain NBRC 105367

Toxin (Protein)


Gene name relE Uniprot ID -
Locus tag Psuf_RS32090 Protein ID WP_173161421.1
Coordinates 7330253..7330570 (-) Length 106 a.a.

Antitoxin (Protein)


Gene name relB Uniprot ID -
Locus tag Psuf_RS32095 Protein ID WP_173161423.1
Coordinates 7330554..7330844 (-) Length 97 a.a.

Genomic Context

Locus tag Coordinates Strand Size (bp) Protein ID Product Description
Psuf_RS32060 7325496..7327328 + 1833 WP_197946093.1 YHS domain-containing protein -
Psuf_RS32070 7327325..7327687 + 363 WP_173167149.1 2Fe-2S iron-sulfur cluster binding domain-containing protein -
Psuf_RS32075 7327704..7328600 + 897 WP_197946566.1 catechol 2,3-dioxygenase -
Psuf_RS32080 7328600..7329679 + 1080 WP_173161419.1 2Fe-2S iron-sulfur cluster binding domain-containing protein -
Psuf_RS32085 7329753..7330202 - 450 Protein_6433 DUF4062 domain-containing protein -
Psuf_RS32090 7330253..7330570 - 318 WP_173161421.1 type II toxin-antitoxin system RelE/ParE family toxin Toxin
Psuf_RS32095 7330554..7330844 - 291 WP_173161423.1 type II toxin-antitoxin system Phd/YefM family antitoxin Antitoxin
Psuf_RS32100 7331456..7332573 + 1118 Protein_6436 aminotransferase class V-fold PLP-dependent enzyme -
Psuf_RS32105 7332829..7333566 - 738 WP_173161425.1 class I SAM-dependent methyltransferase -
Psuf_RS32110 7333722..7334888 - 1167 WP_173161427.1 hypothetical protein -
Psuf_RS32115 7334989..7335240 - 252 WP_173161429.1 hypothetical protein -

Associated MGEs

MGE
detail		 Similar
MGEs		 Relative
position		 MGE Type Cargo ARG Virulence gene Coordinates Length (bp)


Relative position:
(1) inside: TA loci is completely located inside the MGE;
(2) overlap: TA loci is partially overlapped with the MGE;
(3) flank: The TA loci is located in the 5 kb flanking regions of MGE.


Domains

Predicted by InterproScan

Toxin

Toxin-antitoxin system, RelE/ParE toxin family

(54-103)

Antitoxin

Type II toxin-antitoxin system, antitoxin Phd/YefM

(1-73)


Sequences

Toxin        


Download         Length: 106 a.a.        Molecular weight: 12015.30 Da        Isoelectric Point: 8.5675

>T36629 WP_173161421.1 NZ_AP022871:c7330570-7330253 [Phytohabitans suffuscus]
VNEANEQTDSNSEAGELDPYTVVLSPGARRALSDGLPASAAFAAWEFVNGPLRREPHRVGAPLHAPFEGLWRARRGEYRV
RYRIDDKRRQVHVLDVDHRRDAYHR

Download         Length: 318 bp

>T36629 NZ_AP022871:c7330570-7330253 [Phytohabitans suffuscus]
GTGAACGAGGCGAATGAACAGACAGATTCAAACAGTGAAGCCGGCGAGCTCGACCCGTACACGGTGGTCCTGTCGCCCGG
TGCGAGGCGCGCTCTGAGCGACGGCCTCCCGGCCAGCGCCGCGTTCGCGGCCTGGGAGTTCGTCAACGGCCCGCTACGAC
GTGAACCGCATCGCGTCGGCGCTCCACTGCACGCTCCCTTTGAAGGACTCTGGCGTGCCAGACGCGGTGAATATCGAGTC
CGGTATCGCATCGACGACAAGCGCCGCCAGGTTCACGTCCTTGACGTTGACCATCGGCGCGACGCATATCACCGCTGA

Antitoxin


Download         Length: 97 a.a.        Molecular weight: 10660.97 Da        Isoelectric Point: 4.6247

>AT36629 WP_173161423.1 NZ_AP022871:c7330844-7330554 [Phytohabitans suffuscus]
MTTIPLSEAKARLSEVADNVDRTHDRVHITRNGREYVVLISAEDLESLEATIELLSDPAAMVRIRQAEAALDRGEGTSAE
EMAVLMAQRRARERGE

Download         Length: 291 bp

>AT36629 NZ_AP022871:c7330844-7330554 [Phytohabitans suffuscus]
ATGACGACCATACCGCTATCCGAGGCGAAGGCCAGGCTCTCAGAGGTGGCCGACAACGTCGACCGTACCCATGACCGTGT
CCATATCACGCGTAATGGCCGTGAGTACGTGGTGCTGATCTCCGCTGAGGATCTTGAATCACTGGAAGCCACGATTGAGC
TGCTGTCTGATCCGGCCGCTATGGTGCGGATACGGCAGGCCGAGGCTGCGCTGGACAGAGGCGAAGGCACCAGTGCGGAG
GAAATGGCCGTGCTCATGGCGCAGCGGCGGGCTCGTGAACGAGGCGAATGA

Similar Proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
Protein Organism Identities (%) Coverage (%) Ha-value

Structures

Toxin

Source ID Structure

Antitoxin

Source ID Structure

References