Detailed information of TA system    

insolicoBioinformatically predicted

Overview

TA module


Type II Classification (family/domain) vapBC/VapC(toxin)
Location 4188595..4189226 Replicon chromosome
Accession NZ_AP022871
Organism Phytohabitans suffuscus strain NBRC 105367

Toxin (Protein)


Gene name vapC Uniprot ID -
Locus tag Psuf_RS18210 Protein ID WP_173158319.1
Coordinates 4188595..4189011 (-) Length 139 a.a.

Antitoxin (Protein)


Gene name vapB Uniprot ID -
Locus tag Psuf_RS18215 Protein ID WP_173158320.1
Coordinates 4189002..4189226 (-) Length 75 a.a.

Genomic Context

Locus tag Coordinates Strand Size (bp) Protein ID Product Description
Psuf_RS18195 4183784..4185946 - 2163 WP_173158318.1 hypothetical protein -
Psuf_RS18200 4187034..4187516 + 483 Protein_3646 hypothetical protein -
Psuf_RS18205 4187911..4188444 + 534 WP_197945933.1 PIN domain-containing protein -
Psuf_RS18210 4188595..4189011 - 417 WP_173158319.1 PIN domain nuclease Toxin
Psuf_RS18215 4189002..4189226 - 225 WP_173158320.1 hypothetical protein Antitoxin
Psuf_RS18220 4189354..4189569 - 216 WP_173158321.1 hypothetical protein -
Psuf_RS18225 4189752..4190663 - 912 WP_173158322.1 hypothetical protein -
Psuf_RS18230 4190699..4193026 - 2328 WP_173158323.1 2OG-Fe(II) oxygenase -

Associated MGEs

MGE
detail		 Similar
MGEs		 Relative
position		 MGE Type Cargo ARG Virulence gene Coordinates Length (bp)


Relative position:
(1) inside: TA loci is completely located inside the MGE;
(2) overlap: TA loci is partially overlapped with the MGE;
(3) flank: The TA loci is located in the 5 kb flanking regions of MGE.


Domains

Predicted by InterproScan

Toxin

PIN domain

(7-126)

Antitoxin


No domain identified.



Sequences

Toxin        


Download         Length: 139 a.a.        Molecular weight: 15095.29 Da        Isoelectric Point: 6.4726

>T36623 WP_173158319.1 NZ_AP022871:c4189011-4188595 [Phytohabitans suffuscus]
MAVTSWLIDKSAYVRLQLGQVANRDEWNTRISRGLVRLSTITRLELGYSARSGDTGRRQFASPPLSLMPIEHLTPAIEDR
AFEVQMLLADRGQHRAPSIPDLLIAATAEKAALTVLAADKDFDLIAAITGQPVETLNG

Download         Length: 417 bp

>T36623 NZ_AP022871:c4189011-4188595 [Phytohabitans suffuscus]
ATGGCGGTGACAAGCTGGCTGATCGACAAGTCCGCGTACGTGCGGCTCCAACTCGGCCAAGTGGCCAACCGCGACGAGTG
GAACACGCGCATCAGCCGCGGGCTCGTCCGCCTCTCCACGATCACCCGGCTCGAACTCGGCTACTCAGCACGCTCCGGAG
ACACCGGGCGCCGACAGTTCGCCTCCCCACCGCTGTCCCTGATGCCGATAGAGCACCTCACACCCGCCATCGAGGACAGA
GCCTTCGAAGTACAGATGCTCCTGGCCGACCGCGGCCAGCACCGCGCCCCGTCAATTCCCGACCTACTGATCGCAGCGAC
CGCCGAGAAGGCGGCACTGACCGTCCTCGCCGCCGACAAGGACTTCGACCTCATCGCCGCCATCACCGGCCAGCCCGTCG
AAACCCTGAACGGCTGA

Antitoxin


Download         Length: 75 a.a.        Molecular weight: 8337.26 Da        Isoelectric Point: 4.2821

>AT36623 WP_173158320.1 NZ_AP022871:c4189226-4189002 [Phytohabitans suffuscus]
MPNILIRDLSQEAVDRIDAAATNLGLSRNEYLRRKFEEGTIPTGERTVTAEDWQRSAEAFADLADPTVMDAAWR

Download         Length: 225 bp

>AT36623 NZ_AP022871:c4189226-4189002 [Phytohabitans suffuscus]
ATGCCCAACATCCTCATTCGCGACCTGAGCCAAGAAGCCGTCGACCGCATCGACGCCGCAGCCACCAACCTCGGACTGTC
CCGCAACGAGTACCTGCGCCGCAAGTTCGAGGAAGGCACCATCCCCACCGGCGAGCGGACGGTCACCGCCGAAGACTGGC
AACGATCCGCCGAAGCCTTCGCCGACCTGGCCGACCCCACGGTGATGGACGCCGCATGGCGGTGA

Similar Proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
Protein Organism Identities (%) Coverage (%) Ha-value

Structures

Toxin

Source ID Structure

Antitoxin

Source ID Structure

References