Detailed information of TA system
Overview
TA module
| Type | VIII | Classification (family/domain) | SdsR-RyeA/- |
| Location | 2277898..2278169 | Replicon | chromosome |
| Accession | NZ_AP022811 | ||
| Organism | Escherichia coli strain JE86-ST02 | ||
Toxin (RNA)
| Gene name | SdsR | ||
| Locus tag | - | ||
| Coordinates | 2277936..2278039 (-) |
Antitoxin (RNA)
| Gene name | RyeA | ||
| Locus tag | - | ||
| Coordinates | 2277898..2278169 (+) |
Genomic Context
| Locus tag | Coordinates | Strand | Size (bp) | Protein ID | Product | Description |
|---|---|---|---|---|---|---|
| JLZ98_RS11600 | 2275055..2276494 | + | 1440 | WP_024235159.1 | 16S rRNA (cytosine(1407)-C(5))-methyltransferase RsmF | - |
| JLZ98_RS11605 | 2276612..2276848 | + | 237 | WP_001295499.1 | DUF1480 family protein | - |
| JLZ98_RS11610 | 2276953..2277144 | + | 192 | WP_000457842.1 | YebW family protein | - |
| JLZ98_RS11615 | 2277145..2277801 | - | 657 | WP_021565248.1 | protein-serine/threonine phosphatase | - |
| - | 2277898..2278169 | + | 272 | - | - | Antitoxin |
| - | 2277936..2278039 | - | 104 | - | - | Toxin |
| JLZ98_RS11620 | 2278197..2278538 | - | 342 | WP_000976492.1 | YebY family protein | - |
| JLZ98_RS11625 | 2278551..2279423 | - | 873 | WP_000879280.1 | copper homeostasis membrane protein CopD | - |
| JLZ98_RS11630 | 2279427..2279801 | - | 375 | WP_000204699.1 | CopC domain-containing protein YobA | - |
| JLZ98_RS11635 | 2279940..2280170 | + | 231 | WP_000916763.1 | DNA polymerase III subunit theta | - |
| JLZ98_RS11640 | 2280272..2280928 | + | 657 | WP_000011658.1 | carbon-nitrogen hydrolase family protein | - |
| JLZ98_RS11645 | 2280952..2281614 | + | 663 | WP_000944256.1 | exodeoxyribonuclease X | - |
Associated MGEs
| MGE detail |
Similar MGEs |
Relative position |
MGE Type | Cargo ARG | Virulence gene | Coordinates | Length (bp) |
|---|
Relative position:
(1) inside: TA loci is completely located inside the MGE;
(2) overlap: TA loci is partially overlapped with the MGE;
(3) flank: The TA loci is located in the 5 kb flanking regions of MGE.
Sequences
Toxin
Download Length: 104 bp
>T36493 NZ_AP022811:c2278039-2277936 [Escherichia coli]
GGCAAGGCAACTAAGCCTGCATTAATGCCAACTTTTAGCGCACGGCTCTCTCCCAAGAGCCATTTCCCTGGACCGAATAC
AGGAATCGTGTTCGGTCTCTTTTT
GGCAAGGCAACTAAGCCTGCATTAATGCCAACTTTTAGCGCACGGCTCTCTCCCAAGAGCCATTTCCCTGGACCGAATAC
AGGAATCGTGTTCGGTCTCTTTTT
Antitoxin
Download Length: 272 bp
>AT36493 NZ_AP022811:2277898-2278169 [Escherichia coli]
AAAGTCAGCGAAGGAAATGCTTCTGGCTTTTAACAGATAAAAAGAGACCGAACACGATTCCTGTATTCGGTCCAGGGAAA
TGGCTCTTGGGAGAGAGCCGTGCGCTAAAAGTTGGCATTAATGCAGGCTTAGTTGCCTTGCCCTTTAAGAATAGATGACG
ACGCCAGGTTTTCCAGTTTGCGTGCAAAATGGTCAATAAAAAGCGTGGTGGTCATCAGCTGAAATGTTAAAAACCGCCCG
TTCTGGTGAAAGAACTGAGGCGGTTTTTTTAT
AAAGTCAGCGAAGGAAATGCTTCTGGCTTTTAACAGATAAAAAGAGACCGAACACGATTCCTGTATTCGGTCCAGGGAAA
TGGCTCTTGGGAGAGAGCCGTGCGCTAAAAGTTGGCATTAATGCAGGCTTAGTTGCCTTGCCCTTTAAGAATAGATGACG
ACGCCAGGTTTTCCAGTTTGCGTGCAAAATGGTCAATAAAAAGCGTGGTGGTCATCAGCTGAAATGTTAAAAACCGCCCG
TTCTGGTGAAAGAACTGAGGCGGTTTTTTTAT
