Detailed information of TA system    

insolicoBioinformatically predicted

Overview

TA module


Type VIII Classification (family/domain) SdsR-RyeA/-
Location 2003730..2003998 Replicon chromosome
Accession NZ_AP022650
Organism Escherichia coli strain 09-02E

Toxin (RNA)


Gene name SdsR
Locus tag -
Coordinates 2003768..2003870 (-)

Antitoxin (RNA)


Gene name RyeA
Locus tag -
Coordinates 2003730..2003998 (+)

Genomic Context

Locus tag Coordinates Strand Size (bp) Protein ID Product Description
HRS14_RS10015 2000886..2002325 + 1440 WP_024186841.1 16S rRNA (cytosine(1407)-C(5))-methyltransferase RsmF -
HRS14_RS10020 2002444..2002680 + 237 WP_001295499.1 DUF1480 family protein -
HRS14_RS10025 2002785..2002976 + 192 WP_024186842.1 YebW family protein -
HRS14_RS10030 2002977..2003633 - 657 WP_000812744.1 protein-serine/threonine phosphatase -
- 2003730..2003998 + 269 - - Antitoxin
- 2003768..2003870 - 103 - - Toxin
HRS14_RS10035 2004028..2004369 - 342 WP_000984819.1 YebY family protein -
HRS14_RS10040 2004382..2005254 - 873 WP_000879311.1 copper homeostasis membrane protein CopD -
HRS14_RS10045 2005258..2005632 - 375 WP_000168747.1 CopC domain-containing protein YobA -
HRS14_RS10050 2005771..2006001 + 231 WP_000916763.1 DNA polymerase III subunit theta -
HRS14_RS10055 2006103..2006759 + 657 WP_000011664.1 carbon-nitrogen hydrolase family protein -
HRS14_RS10060 2006783..2007445 + 663 WP_000944258.1 exodeoxyribonuclease X -

Associated MGEs

MGE
detail		 Similar
MGEs		 Relative
position		 MGE Type Cargo ARG Virulence gene Coordinates Length (bp)


Relative position:
(1) inside: TA loci is completely located inside the MGE;
(2) overlap: TA loci is partially overlapped with the MGE;
(3) flank: The TA loci is located in the 5 kb flanking regions of MGE.


Sequences

Toxin        


Download         Length: 103 bp

>T36456 NZ_AP022650:c2003870-2003768 [Escherichia coli]
GCAAGGCAACTAAGCCTGCATTAATGCCAACTTTTAGCGCACGGCTCTCTCCCAAGAGCCATTTCCCTGGACCGAATACA
GGAATCGTGTTCGGTCTCTTTTT

Antitoxin


Download         Length: 269 bp

>AT36456 NZ_AP022650:2003730-2003998 [Escherichia coli]
AAAGTCAGCGAAGGGAATGCTTCTGGCTTTTAACAGATAAAAAGAGACCGAACACGATTCCTGTATTCGGTCCAGGGAAA
TGGCTCTTGGGAGAGAGCCGTGCGCTAAAAGTTGGCATTAATGCAGGCTTAGTTGCCTTGCTCTTTAAGAATAGATGACG
ACGCCAGGTTTTCCAGTTTGCGTGCAAAATGGTCAATAAAAAGCGTGGTGGTCATCAGCTTAAATGTTAAAAACCGCCCG
TTCTGGTGAAAGAACTGAGGCGGTTTTTT

Structures

Antitoxin

Download structure file

Antitoxin

Download structure file

References