Detailed information of TA system
Overview
TA module
| Type | VIII | Classification (family/domain) | SdsR-RyeA/- |
| Location | 2841410..2841554 | Replicon | chromosome |
| Accession | NZ_AP022628 | ||
| Organism | Enterobacter asburiae strain A2563 | ||
Toxin (RNA)
| Gene name | SdsR | ||
| Locus tag | - | ||
| Coordinates | 2841416..2841519 (-) |
Antitoxin (RNA)
| Gene name | RyeA | ||
| Locus tag | - | ||
| Coordinates | 2841410..2841554 (+) |
Genomic Context
| Locus tag | Coordinates | Strand | Size (bp) | Protein ID | Product | Description |
|---|---|---|---|---|---|---|
| HRR29_RS13640 | 2836567..2838015 | + | 1449 | WP_197745876.1 | 16S rRNA (cytosine(1407)-C(5))-methyltransferase RsmF | - |
| HRR29_RS13645 | 2838122..2838361 | + | 240 | WP_008500472.1 | YebV family protein | - |
| HRR29_RS13650 | 2838396..2839040 | - | 645 | WP_033145837.1 | protein-serine/threonine phosphatase | - |
| HRR29_RS13655 | 2839207..2840148 | + | 942 | WP_033145838.1 | VirK/YbjX family protein | - |
| HRR29_RS13660 | 2840322..2841218 | + | 897 | WP_033145839.1 | benzoate transporter | - |
| - | 2841410..2841554 | + | 145 | - | - | Antitoxin |
| - | 2841416..2841519 | - | 104 | - | - | Toxin |
| HRR29_RS13665 | 2841658..2841996 | - | 339 | WP_033145840.1 | YebY family protein | - |
| HRR29_RS13670 | 2842013..2842882 | - | 870 | WP_033145841.1 | copper homeostasis membrane protein CopD | - |
| HRR29_RS13675 | 2842884..2843255 | - | 372 | WP_033145842.1 | CopC domain-containing protein YobA | - |
| HRR29_RS13680 | 2843392..2843622 | + | 231 | WP_008500465.1 | DNA polymerase III subunit theta | - |
| HRR29_RS13685 | 2843733..2844383 | + | 651 | WP_033145843.1 | carbon-nitrogen hydrolase family protein | - |
| HRR29_RS13690 | 2844408..2845070 | + | 663 | WP_010432611.1 | exodeoxyribonuclease X | - |
Associated MGEs
| MGE detail |
Similar MGEs |
Relative position |
MGE Type | Cargo ARG | Virulence gene | Coordinates | Length (bp) |
|---|
Relative position:
(1) inside: TA loci is completely located inside the MGE;
(2) overlap: TA loci is partially overlapped with the MGE;
(3) flank: The TA loci is located in the 5 kb flanking regions of MGE.
Sequences
Toxin
Download Length: 104 bp
>T36422 NZ_AP022628:c2841519-2841416 [Enterobacter asburiae]
GGCAAGGCGACTTAGCCTGCATTAATGCCAACTTTTAGCGCACGGCTCTCTCCCAAGAGCCATTTCCCTGGACCGAATAC
AGGAATCGTATTCGGTCTCTTTTT
GGCAAGGCGACTTAGCCTGCATTAATGCCAACTTTTAGCGCACGGCTCTCTCCCAAGAGCCATTTCCCTGGACCGAATAC
AGGAATCGTATTCGGTCTCTTTTT
Antitoxin
Download Length: 145 bp
>AT36422 NZ_AP022628:2841410-2841554 [Enterobacter asburiae]
ACAGATAAAAAGAGACCGAATACGATTCCTGTATTCGGTCCAGGGAAATGGCTCTTGGGAGAGAGCCGTGCGCTAAAAGT
TGGCATTAATGCAGGCTAAGTCGCCTTGCCTTTTAAGAATAGATGACGACGCCAGGTTTTCCAGT
ACAGATAAAAAGAGACCGAATACGATTCCTGTATTCGGTCCAGGGAAATGGCTCTTGGGAGAGAGCCGTGCGCTAAAAGT
TGGCATTAATGCAGGCTAAGTCGCCTTGCCTTTTAAGAATAGATGACGACGCCAGGTTTTCCAGT
