Detailed information of TA system
Overview
TA module
| Type | VIII | Classification (family/domain) | SdsR-RyeA/- |
| Location | 2193553..2193821 | Replicon | chromosome |
| Accession | NZ_AP022549 | ||
| Organism | Escherichia coli strain THO-015 | ||
Toxin (RNA)
| Gene name | SdsR | ||
| Locus tag | - | ||
| Coordinates | 2193681..2193783 (+) |
Antitoxin (RNA)
| Gene name | RyeA | ||
| Locus tag | - | ||
| Coordinates | 2193553..2193821 (-) |
Genomic Context
| Locus tag | Coordinates | Strand | Size (bp) | Protein ID | Product | Description |
|---|---|---|---|---|---|---|
| JLF69_RS10455 | 2190106..2190768 | - | 663 | WP_000944256.1 | exodeoxyribonuclease X | - |
| JLF69_RS10460 | 2190792..2191448 | - | 657 | WP_000011664.1 | carbon-nitrogen hydrolase family protein | - |
| JLF69_RS10465 | 2191550..2191780 | - | 231 | WP_000916763.1 | DNA polymerase III subunit theta | - |
| JLF69_RS10470 | 2191919..2192293 | + | 375 | WP_000168747.1 | CopC domain-containing protein YobA | - |
| JLF69_RS10475 | 2192297..2193169 | + | 873 | WP_000879317.1 | copper homeostasis membrane protein CopD | - |
| JLF69_RS10480 | 2193182..2193523 | + | 342 | WP_000976472.1 | YebY family protein | - |
| - | 2193553..2193821 | - | 269 | - | - | Antitoxin |
| - | 2193681..2193783 | + | 103 | - | - | Toxin |
| JLF69_RS10485 | 2193918..2194574 | + | 657 | WP_000812745.1 | protein-serine/threonine phosphatase | - |
| JLF69_RS10490 | 2194575..2194766 | - | 192 | WP_001296140.1 | YebW family protein | - |
| JLF69_RS10495 | 2194871..2195107 | - | 237 | WP_001295499.1 | DUF1480 family protein | - |
| JLF69_RS10500 | 2195224..2196663 | - | 1440 | WP_001296139.1 | 16S rRNA (cytosine(1407)-C(5))-methyltransferase RsmF | - |
Associated MGEs
| MGE detail |
Similar MGEs |
Relative position |
MGE Type | Cargo ARG | Virulence gene | Coordinates | Length (bp) |
|---|---|---|---|---|---|---|---|
| - | inside | Prophage | - | - | 2168383..2209660 | 41277 |
Relative position:
(1) inside: TA loci is completely located inside the MGE;
(2) overlap: TA loci is partially overlapped with the MGE;
(3) flank: The TA loci is located in the 5 kb flanking regions of MGE.
Sequences
Toxin
Download Length: 103 bp
>T36105 NZ_AP022549:2193681-2193783 [Escherichia coli]
GCAAGGCAACTAAGCCTGCATTAATGCCAACTTTTAGCGCACGGCTCTCTCCCAAGAGCCATTTCCCTGGACCGAATACA
GGAATCGTGTTCGGTCTCTTTTT
GCAAGGCAACTAAGCCTGCATTAATGCCAACTTTTAGCGCACGGCTCTCTCCCAAGAGCCATTTCCCTGGACCGAATACA
GGAATCGTGTTCGGTCTCTTTTT
Antitoxin
Download Length: 269 bp
>AT36105 NZ_AP022549:c2193821-2193553 [Escherichia coli]
AAAGTCAGCGAAGGGAATGCTTCTGGCTTTTAACAGATAAAAAGAGACCGAACACGATTCCTGTATTCGGTCCAGGGAAA
TGGCTCTTGGGAGAGAGCCGTGCGCTAAAAGTTGGCATTAATGCAGGCTTAGTTGCCTTGCTCTTTAAGAATAGATGACG
ACGCCAGGTTTTCCAGTTTGCGTGCAAAATGGTCAATAAAAAGCGTGGTGGTCATCAGCTTAAATATTAAAAACCGCCCG
TTCTGGTGAAAGAACTGAGGCGGTTTTTT
AAAGTCAGCGAAGGGAATGCTTCTGGCTTTTAACAGATAAAAAGAGACCGAACACGATTCCTGTATTCGGTCCAGGGAAA
TGGCTCTTGGGAGAGAGCCGTGCGCTAAAAGTTGGCATTAATGCAGGCTTAGTTGCCTTGCTCTTTAAGAATAGATGACG
ACGCCAGGTTTTCCAGTTTGCGTGCAAAATGGTCAATAAAAAGCGTGGTGGTCATCAGCTTAAATATTAAAAACCGCCCG
TTCTGGTGAAAGAACTGAGGCGGTTTTTT
