Detailed information of TA system
Overview
TA module
| Type | VIII | Classification (family/domain) | SdsR-RyeA/- |
| Location | 2217401..2217569 | Replicon | chromosome |
| Accession | NZ_AP022547 | ||
| Organism | Klebsiella michiganensis strain THO-011 | ||
Toxin (RNA)
| Gene name | SdsR | ||
| Locus tag | - | ||
| Coordinates | 2217459..2217562 (+) |
Antitoxin (RNA)
| Gene name | RyeA | ||
| Locus tag | - | ||
| Coordinates | 2217401..2217569 (-) |
Genomic Context
| Locus tag | Coordinates | Strand | Size (bp) | Protein ID | Product | Description |
|---|---|---|---|---|---|---|
| JLG71_RS10480 | 2212528..2214588 | + | 2061 | WP_033836507.1 | oligopeptidase B | - |
| JLG71_RS10485 | 2214595..2215254 | - | 660 | WP_014229839.1 | exodeoxyribonuclease X | - |
| JLG71_RS10490 | 2215333..2215563 | - | 231 | WP_004103351.1 | DNA polymerase III subunit theta | - |
| JLG71_RS10495 | 2215699..2216073 | + | 375 | WP_014229838.1 | CopC domain-containing protein YobA | - |
| JLG71_RS10500 | 2216078..2216947 | + | 870 | WP_200914191.1 | copper homeostasis membrane protein CopD | - |
| JLG71_RS10505 | 2216964..2217302 | + | 339 | WP_004103344.1 | YebY family protein | - |
| - | 2217401..2217569 | - | 169 | - | - | Antitoxin |
| - | 2217459..2217562 | + | 104 | - | - | Toxin |
| JLG71_RS10510 | 2217687..2218646 | - | 960 | WP_088168007.1 | spore coat U domain-containing protein | - |
| JLG71_RS10515 | 2218661..2220991 | - | 2331 | WP_200914192.1 | fimbria/pilus outer membrane usher protein | - |
| JLG71_RS10520 | 2220994..2221758 | - | 765 | WP_049102470.1 | molecular chaperone | - |
| JLG71_RS10525 | 2221777..2222295 | - | 519 | WP_004852079.1 | spore coat U domain-containing protein | - |
Associated MGEs
| MGE detail |
Similar MGEs |
Relative position |
MGE Type | Cargo ARG | Virulence gene | Coordinates | Length (bp) |
|---|
Relative position:
(1) inside: TA loci is completely located inside the MGE;
(2) overlap: TA loci is partially overlapped with the MGE;
(3) flank: The TA loci is located in the 5 kb flanking regions of MGE.
Sequences
Toxin
Download Length: 104 bp
>T36082 NZ_AP022547:2217459-2217562 [Klebsiella michiganensis]
GGCAAGGCGACTTAGCCTGCATTAATGCCAACTTTTAGCGCACGGCTCTCTCCCAAGAGCCATTTCCCTGGACCGAATAC
AGGAATCGTGTTCGGTCTCTTTTT
GGCAAGGCGACTTAGCCTGCATTAATGCCAACTTTTAGCGCACGGCTCTCTCCCAAGAGCCATTTCCCTGGACCGAATAC
AGGAATCGTGTTCGGTCTCTTTTT
Antitoxin
Download Length: 169 bp
>AT36082 NZ_AP022547:c2217569-2217401 [Klebsiella michiganensis]
AACAGATAAAAAGAGACCGAACACGATTCCTGTATTCGGTCCAGGGAAATGGCTCTTGGGAGAGAGCCGTGCGCTAAAAG
TTGGCATTAATGCAGGCTAAGTCGCCTTGCCTTATAAGAATAGTTTACCGTGTCAGGTTTTCCAGTCCGCGACAAAAGTG
GACGAATAA
AACAGATAAAAAGAGACCGAACACGATTCCTGTATTCGGTCCAGGGAAATGGCTCTTGGGAGAGAGCCGTGCGCTAAAAG
TTGGCATTAATGCAGGCTAAGTCGCCTTGCCTTATAAGAATAGTTTACCGTGTCAGGTTTTCCAGTCCGCGACAAAAGTG
GACGAATAA
