Detailed information of TA system
Overview
TA module
| Type | VIII | Classification (family/domain) | SdsR-RyeA/- |
| Location | 2153998..2154269 | Replicon | chromosome |
| Accession | NZ_AP022536 | ||
| Organism | Escherichia coli strain THO-008 | ||
Toxin (RNA)
| Gene name | SdsR | ||
| Locus tag | - | ||
| Coordinates | 2154128..2154231 (+) |
Antitoxin (RNA)
| Gene name | RyeA | ||
| Locus tag | - | ||
| Coordinates | 2153998..2154269 (-) |
Genomic Context
| Locus tag | Coordinates | Strand | Size (bp) | Protein ID | Product | Description |
|---|---|---|---|---|---|---|
| JLF34_RS09985 | 2150553..2151215 | - | 663 | WP_000944256.1 | exodeoxyribonuclease X | - |
| JLF34_RS09990 | 2151239..2151895 | - | 657 | WP_000011653.1 | carbon-nitrogen hydrolase family protein | - |
| JLF34_RS09995 | 2151997..2152227 | - | 231 | WP_000916763.1 | DNA polymerase III subunit theta | - |
| JLF34_RS10000 | 2152366..2152740 | + | 375 | WP_000168743.1 | CopC domain-containing protein YobA | - |
| JLF34_RS10005 | 2152744..2153616 | + | 873 | WP_001587145.1 | copper homeostasis membrane protein CopD | - |
| JLF34_RS10010 | 2153629..2153970 | + | 342 | WP_000976481.1 | YebY family protein | - |
| - | 2153998..2154269 | - | 272 | - | - | Antitoxin |
| - | 2154128..2154231 | + | 104 | - | - | Toxin |
| JLF34_RS10015 | 2154366..2155022 | + | 657 | WP_000812712.1 | protein-serine/threonine phosphatase | - |
| JLF34_RS10020 | 2155023..2155214 | - | 192 | WP_001296140.1 | YebW family protein | - |
| JLF34_RS10025 | 2155319..2155555 | - | 237 | WP_001295499.1 | DUF1480 family protein | - |
| JLF34_RS10030 | 2155673..2157112 | - | 1440 | WP_001309555.1 | 16S rRNA (cytosine(1407)-C(5))-methyltransferase RsmF | - |
Associated MGEs
| MGE detail |
Similar MGEs |
Relative position |
MGE Type | Cargo ARG | Virulence gene | Coordinates | Length (bp) |
|---|---|---|---|---|---|---|---|
| - | inside | Prophage | - | - | 2146688..2170109 | 23421 |
Relative position:
(1) inside: TA loci is completely located inside the MGE;
(2) overlap: TA loci is partially overlapped with the MGE;
(3) flank: The TA loci is located in the 5 kb flanking regions of MGE.
Sequences
Toxin
Download Length: 104 bp
>T36015 NZ_AP022536:2154128-2154231 [Escherichia coli]
GGCAAGGCAACTAAGCCTGCATTAATGCCAACTTTTAGCGCACGGCTCTCTCCCAAGAGCCATTTCCCTGGACCGAATAC
AGGAATCGTGTTCGGTCTCTTTTT
GGCAAGGCAACTAAGCCTGCATTAATGCCAACTTTTAGCGCACGGCTCTCTCCCAAGAGCCATTTCCCTGGACCGAATAC
AGGAATCGTGTTCGGTCTCTTTTT
Antitoxin
Download Length: 272 bp
>AT36015 NZ_AP022536:c2154269-2153998 [Escherichia coli]
AAAGTCAGCGAAGGGAATGCTTCTGGCTTTTAACAGATAAAAAGAGACCGAACACGATTCCTGTATTCGGTCCAGGGAAA
TGGCTCTTGGGAGAGAGCCGTGCGCTAAAAGTTGGCATTAATGCAGGCTTAGTTGCCTTGCCCTTTAAGAATAGATGACG
ACGCCAGGTTTTCCAGTTTGCGTGCAAAATGGTCAATAAAAAGCGCGGTGGTCATCAGCTTAAATGTTAAAAACCGCCCG
TTCTGGTGAAAGAACTGAGGCGGTTTTTTTAT
AAAGTCAGCGAAGGGAATGCTTCTGGCTTTTAACAGATAAAAAGAGACCGAACACGATTCCTGTATTCGGTCCAGGGAAA
TGGCTCTTGGGAGAGAGCCGTGCGCTAAAAGTTGGCATTAATGCAGGCTTAGTTGCCTTGCCCTTTAAGAATAGATGACG
ACGCCAGGTTTTCCAGTTTGCGTGCAAAATGGTCAATAAAAAGCGCGGTGGTCATCAGCTTAAATGTTAAAAACCGCCCG
TTCTGGTGAAAGAACTGAGGCGGTTTTTTTAT
