Detailed information of TA system
Overview
TA module
| Type | VIII | Classification (family/domain) | SdsR-RyeA/- |
| Location | 2260729..2260997 | Replicon | chromosome |
| Accession | NZ_AP022533 | ||
| Organism | Escherichia coli strain THO-006 | ||
Toxin (RNA)
| Gene name | SdsR | ||
| Locus tag | - | ||
| Coordinates | 2260857..2260959 (+) |
Antitoxin (RNA)
| Gene name | RyeA | ||
| Locus tag | - | ||
| Coordinates | 2260729..2260997 (-) |
Genomic Context
| Locus tag | Coordinates | Strand | Size (bp) | Protein ID | Product | Description |
|---|---|---|---|---|---|---|
| JLF32_RS10590 | 2257281..2257943 | - | 663 | WP_000944256.1 | exodeoxyribonuclease X | - |
| JLF32_RS10595 | 2257967..2258623 | - | 657 | WP_000011644.1 | carbon-nitrogen hydrolase family protein | - |
| JLF32_RS10600 | 2258726..2258956 | - | 231 | WP_000916763.1 | DNA polymerase III subunit theta | - |
| JLF32_RS10605 | 2259095..2259469 | + | 375 | WP_000168747.1 | CopC domain-containing protein YobA | - |
| JLF32_RS10610 | 2259473..2260345 | + | 873 | WP_000879311.1 | copper homeostasis membrane protein CopD | - |
| JLF32_RS10615 | 2260358..2260699 | + | 342 | WP_113519413.1 | YebY family protein | - |
| - | 2260729..2260997 | - | 269 | - | - | Antitoxin |
| - | 2260857..2260959 | + | 103 | - | - | Toxin |
| JLF32_RS10620 | 2261094..2261750 | + | 657 | WP_000812743.1 | protein-serine/threonine phosphatase | - |
| JLF32_RS10625 | 2261751..2261942 | - | 192 | WP_001317886.1 | YebW family protein | - |
| JLF32_RS10630 | 2262047..2262283 | - | 237 | WP_001295499.1 | DUF1480 family protein | - |
| JLF32_RS10635 | 2262401..2263840 | - | 1440 | WP_001704100.1 | 16S rRNA (cytosine(1407)-C(5))-methyltransferase RsmF | - |
Associated MGEs
| MGE detail |
Similar MGEs |
Relative position |
MGE Type | Cargo ARG | Virulence gene | Coordinates | Length (bp) |
|---|
Relative position:
(1) inside: TA loci is completely located inside the MGE;
(2) overlap: TA loci is partially overlapped with the MGE;
(3) flank: The TA loci is located in the 5 kb flanking regions of MGE.
Sequences
Toxin
Download Length: 103 bp
>T35970 NZ_AP022533:2260857-2260959 [Escherichia coli]
GCAAGGCAACTAAGCCTGCATTAATGCCAACTTTTAGCGCACGGCTCTCTCCCAAGAGCCATTTCCCTGGACCGAATACA
GGAATCGTGTTCGGTCTCTTTTT
GCAAGGCAACTAAGCCTGCATTAATGCCAACTTTTAGCGCACGGCTCTCTCCCAAGAGCCATTTCCCTGGACCGAATACA
GGAATCGTGTTCGGTCTCTTTTT
Antitoxin
Download Length: 269 bp
>AT35970 NZ_AP022533:c2260997-2260729 [Escherichia coli]
AAAGTCAGCGAAGGGAATGCTTCTGGCTTTTAACAGATAAAAAGAGACCGAACACGATTCCTGTATTCGGTCCAGGGAAA
TGGCTCTTGGGAGAGAGCCGTGCGCTAAAAGTTGGCATTAATGCAGGCTTAGTTGCCTTGCTCTTTAAGAATAGATGACG
ACGCCAGGTTTTCCAGTTTGCGTGCAAAATGGTCAATAAAAAGCGTGGTGGTCATCAGCTTAAATGTTAAAAACCGCCCG
TTCTGGTGAAAGAACTGAGGCGGTTTTTT
AAAGTCAGCGAAGGGAATGCTTCTGGCTTTTAACAGATAAAAAGAGACCGAACACGATTCCTGTATTCGGTCCAGGGAAA
TGGCTCTTGGGAGAGAGCCGTGCGCTAAAAGTTGGCATTAATGCAGGCTTAGTTGCCTTGCTCTTTAAGAATAGATGACG
ACGCCAGGTTTTCCAGTTTGCGTGCAAAATGGTCAATAAAAAGCGTGGTGGTCATCAGCTTAAATGTTAAAAACCGCCCG
TTCTGGTGAAAGAACTGAGGCGGTTTTTT
