Detailed information of TA system
Overview
TA module
| Type | VIII | Classification (family/domain) | SdsR-RyeA/- |
| Location | 1808324..1808469 | Replicon | chromosome |
| Accession | NZ_AP022527 | ||
| Organism | Klebsiella pneumoniae strain THO-004 | ||
Toxin (RNA)
| Gene name | SdsR | ||
| Locus tag | - | ||
| Coordinates | 1808360..1808462 (+) |
Antitoxin (RNA)
| Gene name | RyeA | ||
| Locus tag | - | ||
| Coordinates | 1808324..1808469 (-) |
Genomic Context
| Locus tag | Coordinates | Strand | Size (bp) | Protein ID | Product | Description |
|---|---|---|---|---|---|---|
| JLF70_RS08755 | 1803454..1805514 | + | 2061 | WP_004151449.1 | oligopeptidase B | - |
| JLF70_RS08760 | 1805518..1806177 | - | 660 | WP_002911407.1 | exodeoxyribonuclease X | - |
| JLF70_RS08765 | 1806256..1806486 | - | 231 | WP_002911406.1 | DNA polymerase III subunit theta | - |
| JLF70_RS08770 | 1806599..1806973 | + | 375 | WP_004151448.1 | CopC domain-containing protein YobA | - |
| JLF70_RS08775 | 1806977..1807846 | + | 870 | WP_009307538.1 | copper homeostasis membrane protein CopD | - |
| JLF70_RS08780 | 1807863..1808201 | + | 339 | WP_009307539.1 | YebY family protein | - |
| - | 1808324..1808469 | - | 146 | - | - | Antitoxin |
| - | 1808360..1808462 | + | 103 | - | - | Toxin |
| JLF70_RS08785 | 1808838..1808981 | - | 144 | WP_002911398.1 | Ecr family regulatory small membrane protein | - |
| JLF70_RS08790 | 1809086..1810054 | - | 969 | WP_004151446.1 | VirK/YbjX family protein | - |
| JLF70_RS08795 | 1810211..1810864 | + | 654 | WP_009307541.1 | protein-serine/threonine phosphatase | - |
| JLF70_RS08800 | 1810861..1811052 | - | 192 | WP_002911395.1 | YebW family protein | - |
| JLF70_RS08805 | 1811150..1811389 | - | 240 | WP_002911393.1 | YebV family protein | - |
| JLF70_RS08810 | 1811505..1812938 | - | 1434 | WP_004148845.1 | 16S rRNA (cytosine(1407)-C(5))-methyltransferase RsmF | - |
Associated MGEs
| MGE detail |
Similar MGEs |
Relative position |
MGE Type | Cargo ARG | Virulence gene | Coordinates | Length (bp) |
|---|
Relative position:
(1) inside: TA loci is completely located inside the MGE;
(2) overlap: TA loci is partially overlapped with the MGE;
(3) flank: The TA loci is located in the 5 kb flanking regions of MGE.
Sequences
Toxin
Download Length: 103 bp
>T35947 NZ_AP022527:1808360-1808462 [Klebsiella pneumoniae]
GCAAGGCGACTTAGCCTGCATTAATGCCAACTTTTAGCGCACGGCTCTCTCCCAAGAGCCATTTCCCTGGACCGAATACA
GGAATCGTATTCGGTCTCTTTTT
GCAAGGCGACTTAGCCTGCATTAATGCCAACTTTTAGCGCACGGCTCTCTCCCAAGAGCCATTTCCCTGGACCGAATACA
GGAATCGTATTCGGTCTCTTTTT
Antitoxin
Download Length: 146 bp
>AT35947 NZ_AP022527:c1808469-1808324 [Klebsiella pneumoniae]
TAAAGATAAAAAGAGACCGAATACGATTCCTGTATTCGGTCCAGGGAAATGGCTCTTGGGAGAGAGCCGTGCGCTAAAAG
TTGGCATTAATGCAGGCTAAGTCGCCTTGCACTATAAGAATAGTTTAACGCGTCAGCTTTTCCAGT
TAAAGATAAAAAGAGACCGAATACGATTCCTGTATTCGGTCCAGGGAAATGGCTCTTGGGAGAGAGCCGTGCGCTAAAAG
TTGGCATTAATGCAGGCTAAGTCGCCTTGCACTATAAGAATAGTTTAACGCGTCAGCTTTTCCAGT
