Detailed information of TA system
Overview
TA module
| Type | VIII | Classification (family/domain) | SdsR-RyeA/- |
| Location | 2936422..2936566 | Replicon | chromosome |
| Accession | NZ_AP022519 | ||
| Organism | Enterobacter cloacae strain STN0717-73 | ||
Toxin (RNA)
| Gene name | SdsR | ||
| Locus tag | - | ||
| Coordinates | 2936428..2936531 (-) |
Antitoxin (RNA)
| Gene name | RyeA | ||
| Locus tag | - | ||
| Coordinates | 2936422..2936566 (+) |
Genomic Context
| Locus tag | Coordinates | Strand | Size (bp) | Protein ID | Product | Description |
|---|---|---|---|---|---|---|
| JLF40_RS14245 | 2931579..2933027 | + | 1449 | WP_197745876.1 | 16S rRNA (cytosine(1407)-C(5))-methyltransferase RsmF | - |
| JLF40_RS14250 | 2933134..2933373 | + | 240 | WP_008500472.1 | YebV family protein | - |
| JLF40_RS14255 | 2933408..2934052 | - | 645 | WP_033145837.1 | protein-serine/threonine phosphatase | - |
| JLF40_RS14260 | 2934219..2935160 | + | 942 | WP_033145838.1 | VirK/YbjX family protein | - |
| JLF40_RS14265 | 2935334..2936230 | + | 897 | WP_033145839.1 | benzoate transporter | - |
| - | 2936422..2936566 | + | 145 | - | - | Antitoxin |
| - | 2936428..2936531 | - | 104 | - | - | Toxin |
| JLF40_RS14270 | 2936670..2937008 | - | 339 | WP_033145840.1 | YebY family protein | - |
| JLF40_RS14275 | 2937025..2937894 | - | 870 | WP_033145841.1 | copper homeostasis membrane protein CopD | - |
| JLF40_RS14280 | 2937896..2938267 | - | 372 | WP_033145842.1 | CopC domain-containing protein YobA | - |
| JLF40_RS14285 | 2938404..2938634 | + | 231 | WP_008500465.1 | DNA polymerase III subunit theta | - |
| JLF40_RS14290 | 2938745..2939395 | + | 651 | WP_033145843.1 | carbon-nitrogen hydrolase family protein | - |
| JLF40_RS14295 | 2939420..2940082 | + | 663 | WP_010432611.1 | exodeoxyribonuclease X | - |
Associated MGEs
| MGE detail |
Similar MGEs |
Relative position |
MGE Type | Cargo ARG | Virulence gene | Coordinates | Length (bp) |
|---|
Relative position:
(1) inside: TA loci is completely located inside the MGE;
(2) overlap: TA loci is partially overlapped with the MGE;
(3) flank: The TA loci is located in the 5 kb flanking regions of MGE.
Sequences
Toxin
Download Length: 104 bp
>T35894 NZ_AP022519:c2936531-2936428 [Enterobacter cloacae]
GGCAAGGCGACTTAGCCTGCATTAATGCCAACTTTTAGCGCACGGCTCTCTCCCAAGAGCCATTTCCCTGGACCGAATAC
AGGAATCGTATTCGGTCTCTTTTT
GGCAAGGCGACTTAGCCTGCATTAATGCCAACTTTTAGCGCACGGCTCTCTCCCAAGAGCCATTTCCCTGGACCGAATAC
AGGAATCGTATTCGGTCTCTTTTT
Antitoxin
Download Length: 145 bp
>AT35894 NZ_AP022519:2936422-2936566 [Enterobacter cloacae]
ACAGATAAAAAGAGACCGAATACGATTCCTGTATTCGGTCCAGGGAAATGGCTCTTGGGAGAGAGCCGTGCGCTAAAAGT
TGGCATTAATGCAGGCTAAGTCGCCTTGCCTTTTAAGAATAGATGACGACGCCAGGTTTTCCAGT
ACAGATAAAAAGAGACCGAATACGATTCCTGTATTCGGTCCAGGGAAATGGCTCTTGGGAGAGAGCCGTGCGCTAAAAGT
TGGCATTAATGCAGGCTAAGTCGCCTTGCCTTTTAAGAATAGATGACGACGCCAGGTTTTCCAGT
