Detailed information of TA system
Overview
TA module
| Type | VIII | Classification (family/domain) | SdsR-RyeA/- |
| Location | 2995037..2995180 | Replicon | chromosome |
| Accession | NZ_AP022513 | ||
| Organism | Citrobacter portucalensis strain STN0717-72 | ||
Toxin (RNA)
| Gene name | SdsR | ||
| Locus tag | - | ||
| Coordinates | 2995042..2995145 (-) |
Antitoxin (RNA)
| Gene name | RyeA | ||
| Locus tag | - | ||
| Coordinates | 2995037..2995180 (+) |
Genomic Context
| Locus tag | Coordinates | Strand | Size (bp) | Protein ID | Product | Description |
|---|---|---|---|---|---|---|
| JLF48_RS14405 | 2991684..2992769 | + | 1086 | WP_200923014.1 | recombinase RecT | - |
| JLF48_RS14410 | 2992804..2993148 | + | 345 | WP_054528498.1 | hypothetical protein | - |
| JLF48_RS14415 | 2993331..2993573 | + | 243 | WP_003841647.1 | DUF4060 family protein | - |
| JLF48_RS14420 | 2993638..2993910 | + | 273 | WP_016156226.1 | hypothetical protein | - |
| JLF48_RS14425 | 2993879..2994964 | + | 1086 | WP_200923013.1 | phage integrase Arm DNA-binding domain-containing protein | - |
| - | 2995037..2995180 | + | 144 | - | - | Antitoxin |
| - | 2995042..2995145 | - | 104 | - | - | Toxin |
| JLF48_RS14430 | 2995301..2995639 | - | 339 | WP_003833793.1 | YebY family protein | - |
| JLF48_RS14435 | 2995660..2996532 | - | 873 | WP_003833795.1 | copper homeostasis membrane protein CopD | - |
| JLF48_RS14440 | 2996536..2996910 | - | 375 | WP_003833799.1 | CopC domain-containing protein YobA | - |
| JLF48_RS14445 | 2997054..2997284 | + | 231 | WP_003833800.1 | DNA polymerase III subunit theta | - |
| JLF48_RS14450 | 2997391..2998047 | + | 657 | WP_003833801.1 | carbon-nitrogen hydrolase family protein | - |
| JLF48_RS14455 | 2998071..2998733 | + | 663 | WP_003833802.1 | exodeoxyribonuclease X | - |
Associated MGEs
| MGE detail |
Similar MGEs |
Relative position |
MGE Type | Cargo ARG | Virulence gene | Coordinates | Length (bp) |
|---|---|---|---|---|---|---|---|
| - | inside | Prophage | - | - | 2931274..3016877 | 85603 |
Relative position:
(1) inside: TA loci is completely located inside the MGE;
(2) overlap: TA loci is partially overlapped with the MGE;
(3) flank: The TA loci is located in the 5 kb flanking regions of MGE.
Sequences
Toxin
Download Length: 104 bp
>T35875 NZ_AP022513:c2995145-2995042 [Citrobacter portucalensis]
GGCAGGGTAACTTAGCCTGCATTAATGCCAACTTTTAGCGCACGGCTCTCTCCCAAGAGCCATTTCCCTGGACCGAATAC
AGGAATCGTATTCGGTCTCTTTTT
GGCAGGGTAACTTAGCCTGCATTAATGCCAACTTTTAGCGCACGGCTCTCTCCCAAGAGCCATTTCCCTGGACCGAATAC
AGGAATCGTATTCGGTCTCTTTTT
Antitoxin
Download Length: 144 bp
>AT35875 NZ_AP022513:2995037-2995180 [Citrobacter portucalensis]
CACATAAAAAGAGACCGAATACGATTCCTGTATTCGGTCCAGGGAAATGGCTCTTGGGAGAGAGCCGTGCGCTAAAAGTT
GGCATTAATGCAGGCTAAGTTACCCTGCCATTTAAGAATAGATGACAGCGCCAGGTTTTCCAGT
CACATAAAAAGAGACCGAATACGATTCCTGTATTCGGTCCAGGGAAATGGCTCTTGGGAGAGAGCCGTGCGCTAAAAGTT
GGCATTAATGCAGGCTAAGTTACCCTGCCATTTAAGAATAGATGACAGCGCCAGGTTTTCCAGT
