Detailed information of TA system
Bioinformatically predictedOverview
TA module
Type | II | Classification (family/domain) | parDE/ParE-YefM |
Location | 60369..60935 | Replicon | chromosome |
Accession | NZ_AP022513 | ||
Organism | Citrobacter portucalensis strain STN0717-72 |
Toxin (Protein)
Gene name | parE | Uniprot ID | - |
Locus tag | JLF48_RS00305 | Protein ID | WP_200920966.1 |
Coordinates | 60369..60671 (-) | Length | 101 a.a. |
Antitoxin (Protein)
Gene name | parD | Uniprot ID | A0A7I6X5E4 |
Locus tag | JLF48_RS00310 | Protein ID | WP_008786497.1 |
Coordinates | 60675..60935 (-) | Length | 87 a.a. |
Genomic Context
Locus tag | Coordinates | Strand | Size (bp) | Protein ID | Product | Description |
---|---|---|---|---|---|---|
JLF48_RS00285 | 56021..58801 | + | 2781 | WP_200920964.1 | intestinal colonization autotransporter adhesin MisL | - |
JLF48_RS00290 | 58894..59226 | - | 333 | WP_003827189.1 | DUF1493 family protein | - |
JLF48_RS00295 | 59220..59663 | - | 444 | Protein_58 | hypothetical protein | - |
JLF48_RS00300 | 59674..60159 | - | 486 | WP_200920965.1 | type VI secretion system tube protein Hcp | - |
JLF48_RS00305 | 60369..60671 | - | 303 | WP_200920966.1 | type II toxin-antitoxin system RelE/ParE family toxin | Toxin |
JLF48_RS00310 | 60675..60935 | - | 261 | WP_008786497.1 | type II toxin-antitoxin system Phd/YefM family antitoxin | Antitoxin |
JLF48_RS00315 | 61110..61400 | - | 291 | WP_197385420.1 | SymE family type I addiction module toxin | - |
JLF48_RS00320 | 61537..61731 | + | 195 | WP_003827195.1 | toxin-antitoxin system HicB family antitoxin | - |
JLF48_RS00325 | 61740..62296 | - | 557 | Protein_64 | hypothetical protein | - |
JLF48_RS00335 | 62790..64172 | + | 1383 | WP_200920967.1 | glycoside-pentoside-hexuronide family transporter | - |
Associated MGEs
MGE detail |
Similar MGEs |
Relative position |
MGE Type | Cargo ARG | Virulence gene | Coordinates | Length (bp) |
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Relative position:
(1) inside: TA loci is completely located inside the MGE;
(2) overlap: TA loci is partially overlapped with the MGE;
(3) flank: The TA loci is located in the 5 kb flanking regions of MGE.
Sequences
Toxin
Download Length: 101 a.a. Molecular weight: 11621.25 Da Isoelectric Point: 8.0883
>T35867 WP_200920966.1 NZ_AP022513:c60671-60369 [Citrobacter portucalensis]
VSYKLTGEAQHDIIEIRDYTSRNWGAKQSKDYLRKLQVVLSQLAEMPGMGHHRINDFCEDIYSFPYVSHMIYYSAQDTNI
VVLAVLHQSRVPTKHLGQRL
VSYKLTGEAQHDIIEIRDYTSRNWGAKQSKDYLRKLQVVLSQLAEMPGMGHHRINDFCEDIYSFPYVSHMIYYSAQDTNI
VVLAVLHQSRVPTKHLGQRL
Download Length: 303 bp
>T35867 NZ_AP022513:c60671-60369 [Citrobacter portucalensis]
GTGAGTTACAAACTTACTGGAGAAGCACAGCACGATATTATTGAAATCCGTGATTACACATCAAGAAATTGGGGCGCTAA
ACAGTCCAAGGATTATCTTAGAAAATTACAGGTCGTTCTCTCTCAGTTAGCTGAAATGCCAGGCATGGGTCATCATCGAA
TTAATGATTTTTGTGAAGATATTTACAGCTTTCCTTATGTTAGCCATATGATTTACTACAGTGCACAAGACACAAATATT
GTTGTACTGGCAGTCTTACACCAAAGCCGAGTACCAACAAAACATCTGGGACAACGTTTGTAG
GTGAGTTACAAACTTACTGGAGAAGCACAGCACGATATTATTGAAATCCGTGATTACACATCAAGAAATTGGGGCGCTAA
ACAGTCCAAGGATTATCTTAGAAAATTACAGGTCGTTCTCTCTCAGTTAGCTGAAATGCCAGGCATGGGTCATCATCGAA
TTAATGATTTTTGTGAAGATATTTACAGCTTTCCTTATGTTAGCCATATGATTTACTACAGTGCACAAGACACAAATATT
GTTGTACTGGCAGTCTTACACCAAAGCCGAGTACCAACAAAACATCTGGGACAACGTTTGTAG
Antitoxin
Download Length: 87 a.a. Molecular weight: 9736.15 Da Isoelectric Point: 5.5882
>AT35867 WP_008786497.1 NZ_AP022513:c60935-60675 [Citrobacter portucalensis]
MHTLTANEAKTQFGDMLLKAQREPVQINRNGKPVAVVVSIEDYEQMEAMKLQLLKAKIQRAQNDIHLGNIVDGDAFFDEL
MDQHKG
MHTLTANEAKTQFGDMLLKAQREPVQINRNGKPVAVVVSIEDYEQMEAMKLQLLKAKIQRAQNDIHLGNIVDGDAFFDEL
MDQHKG
Download Length: 261 bp
>AT35867 NZ_AP022513:c60935-60675 [Citrobacter portucalensis]
ATGCATACTCTTACGGCAAATGAAGCCAAAACCCAGTTTGGCGATATGCTACTTAAAGCGCAGCGAGAGCCAGTGCAAAT
TAACCGTAACGGTAAGCCTGTTGCAGTTGTTGTTTCCATTGAAGACTATGAACAAATGGAAGCCATGAAGCTCCAGTTAC
TGAAGGCCAAAATTCAGCGTGCTCAAAACGATATTCATTTGGGCAATATTGTTGATGGTGATGCTTTTTTTGATGAGTTG
ATGGATCAACACAAAGGATAA
ATGCATACTCTTACGGCAAATGAAGCCAAAACCCAGTTTGGCGATATGCTACTTAAAGCGCAGCGAGAGCCAGTGCAAAT
TAACCGTAACGGTAAGCCTGTTGCAGTTGTTGTTTCCATTGAAGACTATGAACAAATGGAAGCCATGAAGCTCCAGTTAC
TGAAGGCCAAAATTCAGCGTGCTCAAAACGATATTCATTTGGGCAATATTGTTGATGGTGATGCTTTTTTTGATGAGTTG
ATGGATCAACACAAAGGATAA
Similar Proteins
Only experimentally validated proteins are listed.
Protein | Organism | Identities (%) | Coverage (%) | Ha-value |
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Protein | Organism | Identities (%) | Coverage (%) | Ha-value |
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