Detailed information of TA system    

insolicoBioinformatically predicted

Overview


TA module


Type II Classification (family/domain) parDE/ParE-YefM
Location 60369..60935 Replicon chromosome
Accession NZ_AP022513
Organism Citrobacter portucalensis strain STN0717-72

Toxin (Protein)


Gene name parE Uniprot ID -
Locus tag JLF48_RS00305 Protein ID WP_200920966.1
Coordinates 60369..60671 (-) Length 101 a.a.

Antitoxin (Protein)


Gene name parD Uniprot ID A0A7I6X5E4
Locus tag JLF48_RS00310 Protein ID WP_008786497.1
Coordinates 60675..60935 (-) Length 87 a.a.

Genomic Context


Locus tag Coordinates Strand Size (bp) Protein ID Product Description
JLF48_RS00285 56021..58801 + 2781 WP_200920964.1 intestinal colonization autotransporter adhesin MisL -
JLF48_RS00290 58894..59226 - 333 WP_003827189.1 DUF1493 family protein -
JLF48_RS00295 59220..59663 - 444 Protein_58 hypothetical protein -
JLF48_RS00300 59674..60159 - 486 WP_200920965.1 type VI secretion system tube protein Hcp -
JLF48_RS00305 60369..60671 - 303 WP_200920966.1 type II toxin-antitoxin system RelE/ParE family toxin Toxin
JLF48_RS00310 60675..60935 - 261 WP_008786497.1 type II toxin-antitoxin system Phd/YefM family antitoxin Antitoxin
JLF48_RS00315 61110..61400 - 291 WP_197385420.1 SymE family type I addiction module toxin -
JLF48_RS00320 61537..61731 + 195 WP_003827195.1 toxin-antitoxin system HicB family antitoxin -
JLF48_RS00325 61740..62296 - 557 Protein_64 hypothetical protein -
JLF48_RS00335 62790..64172 + 1383 WP_200920967.1 glycoside-pentoside-hexuronide family transporter -

Associated MGEs


MGE
detail
Similar
MGEs
Relative
position
MGE Type Cargo ARG Virulence gene Coordinates Length (bp)


Relative position:
(1) inside: TA loci is completely located inside the MGE;
(2) overlap: TA loci is partially overlapped with the MGE;
(3) flank: The TA loci is located in the 5 kb flanking regions of MGE.



Sequences


Toxin        


Download         Length: 101 a.a.        Molecular weight: 11621.25 Da        Isoelectric Point: 8.0883

>T35867 WP_200920966.1 NZ_AP022513:c60671-60369 [Citrobacter portucalensis]
VSYKLTGEAQHDIIEIRDYTSRNWGAKQSKDYLRKLQVVLSQLAEMPGMGHHRINDFCEDIYSFPYVSHMIYYSAQDTNI
VVLAVLHQSRVPTKHLGQRL

Download         Length: 303 bp

>T35867 NZ_AP022513:c60671-60369 [Citrobacter portucalensis]
GTGAGTTACAAACTTACTGGAGAAGCACAGCACGATATTATTGAAATCCGTGATTACACATCAAGAAATTGGGGCGCTAA
ACAGTCCAAGGATTATCTTAGAAAATTACAGGTCGTTCTCTCTCAGTTAGCTGAAATGCCAGGCATGGGTCATCATCGAA
TTAATGATTTTTGTGAAGATATTTACAGCTTTCCTTATGTTAGCCATATGATTTACTACAGTGCACAAGACACAAATATT
GTTGTACTGGCAGTCTTACACCAAAGCCGAGTACCAACAAAACATCTGGGACAACGTTTGTAG

Antitoxin


Download         Length: 87 a.a.        Molecular weight: 9736.15 Da        Isoelectric Point: 5.5882

>AT35867 WP_008786497.1 NZ_AP022513:c60935-60675 [Citrobacter portucalensis]
MHTLTANEAKTQFGDMLLKAQREPVQINRNGKPVAVVVSIEDYEQMEAMKLQLLKAKIQRAQNDIHLGNIVDGDAFFDEL
MDQHKG

Download         Length: 261 bp

>AT35867 NZ_AP022513:c60935-60675 [Citrobacter portucalensis]
ATGCATACTCTTACGGCAAATGAAGCCAAAACCCAGTTTGGCGATATGCTACTTAAAGCGCAGCGAGAGCCAGTGCAAAT
TAACCGTAACGGTAAGCCTGTTGCAGTTGTTGTTTCCATTGAAGACTATGAACAAATGGAAGCCATGAAGCTCCAGTTAC
TGAAGGCCAAAATTCAGCGTGCTCAAAACGATATTCATTTGGGCAATATTGTTGATGGTGATGCTTTTTTTGATGAGTTG
ATGGATCAACACAAAGGATAA

Similar Proteins


Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
Protein Organism Identities (%) Coverage (%) Ha-value

Structures


Toxin

Source ID Structure


Antitoxin

Source ID Structure
AlphaFold DB A0A7I6X5E4

References