Detailed information of TA system    

insolicoBioinformatically predicted

Overview

TA module


Type IV Classification (family/domain) cptAB/Cpta(toxin)
Location 4053283..4053940 Replicon chromosome
Accession NZ_AP022510
Organism Enterobacter hormaechei strain STN0717-64

Toxin (Protein)


Gene name cptA Uniprot ID A0A179PSF7
Locus tag JLF41_RS19400 Protein ID WP_017382887.1
Coordinates 4053283..4053693 (-) Length 137 a.a.

Antitoxin (Protein)


Gene name cptB Uniprot ID G8LDB7
Locus tag JLF41_RS19405 Protein ID WP_003863437.1
Coordinates 4053674..4053940 (-) Length 89 a.a.

Genomic Context

Locus tag Coordinates Strand Size (bp) Protein ID Product Description
JLF41_RS19380 4049281..4051014 - 1734 WP_032649421.1 single-stranded-DNA-specific exonuclease RecJ -
JLF41_RS19385 4051020..4051733 - 714 WP_015571792.1 bifunctional protein-disulfide isomerase/oxidoreductase DsbC -
JLF41_RS19390 4051762..4052658 - 897 WP_003863442.1 site-specific tyrosine recombinase XerD -
JLF41_RS19395 4052760..4053281 + 522 WP_032649423.1 flavodoxin FldB -
JLF41_RS19400 4053283..4053693 - 411 WP_017382887.1 protein YgfX Toxin
JLF41_RS19405 4053674..4053940 - 267 WP_003863437.1 FAD assembly factor SdhE Antitoxin
JLF41_RS19410 4054235..4055215 + 981 WP_022649306.1 tRNA-modifying protein YgfZ -
JLF41_RS19415 4055327..4055986 - 660 WP_003863433.1 hemolysin III family protein -
JLF41_RS19420 4056253..4056984 + 732 WP_032649427.1 MurR/RpiR family transcriptional regulator -
JLF41_RS19425 4057101..4058534 + 1434 WP_017382891.1 6-phospho-beta-glucosidase BglA -

Associated MGEs

MGE
detail		 Similar
MGEs		 Relative
position		 MGE Type Cargo ARG Virulence gene Coordinates Length (bp)


Relative position:
(1) inside: TA loci is completely located inside the MGE;
(2) overlap: TA loci is partially overlapped with the MGE;
(3) flank: The TA loci is located in the 5 kb flanking regions of MGE.


Domains

Predicted by InterproScan

Toxin

Inner membrane protein YgfX

(3-132)

Antitoxin

Flavinator of succinate dehydrogenase

(7-79)


Sequences

Toxin        


Download         Length: 137 a.a.        Molecular weight: 16321.21 Da        Isoelectric Point: 11.4775

>T35863 WP_017382887.1 NZ_AP022510:c4053693-4053283 [Enterobacter hormaechei]
VVLWQSDLRVSWRSQWMSLLLHGLVAALVLLVPWPLSYTPLWLLLLSFVVFDSVRSQRRINARQGEIKLLMDSRLRWQGK
EWEMMGTPWMLNTGMMLRLRRVEDNRRQHLWLAADSMDPAEWRDLRRLIVQQPTQE

Download         Length: 411 bp

>T35863 NZ_AP022510:c4053693-4053283 [Enterobacter hormaechei]
GTGGTCCTGTGGCAATCTGATCTTCGCGTCTCCTGGCGCTCACAGTGGATGTCCTTACTGCTCCACGGGCTGGTGGCGGC
ACTGGTGTTATTGGTGCCGTGGCCGCTTAGCTATACCCCTCTGTGGTTGCTATTGCTGTCGTTTGTGGTGTTTGACAGCG
TGCGCAGCCAGCGTCGAATCAACGCCCGTCAGGGTGAAATTAAGCTGCTGATGGATTCTCGCCTGCGCTGGCAGGGAAAA
GAGTGGGAGATGATGGGGACGCCGTGGATGCTTAATACCGGGATGATGCTACGGCTGCGTCGGGTCGAGGATAACCGTCG
CCAGCACCTGTGGCTGGCCGCAGACAGTATGGATCCCGCGGAGTGGCGAGATCTGCGCCGGTTGATCGTGCAACAGCCGA
CGCAGGAGTAA

Antitoxin


Download         Length: 89 a.a.        Molecular weight: 10526.96 Da        Isoelectric Point: 4.8310

>AT35863 WP_003863437.1 NZ_AP022510:c4053940-4053674 [Enterobacter hormaechei]
MDINNKARIHWACRRGMRELDISIMPFFEYEYDSLSDDDKRLFVRLLESDDPDLFNWLMNHGKPADTELQRMVQLIQTRN
QERGPVAI

Download         Length: 267 bp

>AT35863 NZ_AP022510:c4053940-4053674 [Enterobacter hormaechei]
ATGGATATTAACAACAAGGCCCGTATTCACTGGGCGTGCCGTCGCGGCATGCGTGAACTTGATATCTCCATCATGCCTTT
CTTCGAGTATGAGTACGACAGCTTAAGCGATGACGATAAGCGCCTGTTTGTCCGTCTGCTTGAGTCTGACGATCCGGATT
TATTCAACTGGCTGATGAATCACGGCAAGCCCGCCGACACCGAGTTGCAACGGATGGTGCAATTAATTCAAACACGGAAT
CAGGAACGTGGTCCTGTGGCAATCTGA

Similar Proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
Protein Organism Identities (%) Coverage (%) Ha-value

Structures

Toxin

Source ID Structure
AlphaFold DB A0A179PSF7

Antitoxin

Source ID Structure
AlphaFold DB A0A837F8P5

References