Detailed information of TA system
Overview
TA module
| Type | VIII | Classification (family/domain) | SdsR-RyeA/- |
| Location | 2938781..2938984 | Replicon | chromosome |
| Accession | NZ_AP022510 | ||
| Organism | Enterobacter hormaechei strain STN0717-64 | ||
Toxin (RNA)
| Gene name | SdsR | ||
| Locus tag | - | ||
| Coordinates | 2938788..2938891 (-) |
Antitoxin (RNA)
| Gene name | RyeA | ||
| Locus tag | - | ||
| Coordinates | 2938781..2938984 (+) |
Genomic Context
| Locus tag | Coordinates | Strand | Size (bp) | Protein ID | Product | Description |
|---|---|---|---|---|---|---|
| JLF41_RS14085 | 2934324..2934428 | + | 105 | Protein_2759 | regulator | - |
| JLF41_RS14090 | 2934480..2934647 | + | 168 | WP_162875207.1 | hypothetical protein | - |
| JLF41_RS14095 | 2934644..2935195 | + | 552 | WP_032647502.1 | phage N-6-adenine-methyltransferase | - |
| JLF41_RS14100 | 2935192..2935410 | + | 219 | WP_006176198.1 | hypothetical protein | - |
| JLF41_RS14105 | 2935407..2935679 | + | 273 | WP_080337312.1 | DUF5405 family protein | - |
| JLF41_RS14110 | 2935676..2935876 | + | 201 | WP_032647498.1 | hypothetical protein | - |
| JLF41_RS14115 | 2935968..2936183 | + | 216 | WP_032648685.1 | TraR/DksA family transcriptional regulator | - |
| JLF41_RS14120 | 2936183..2936422 | + | 240 | Protein_2766 | DUF4222 domain-containing protein | - |
| JLF41_RS14125 | 2936472..2937224 | + | 753 | WP_032648687.1 | methyltransferase | - |
| JLF41_RS14130 | 2937384..2937656 | + | 273 | WP_023300430.1 | hypothetical protein | - |
| JLF41_RS14135 | 2937625..2938710 | + | 1086 | WP_023300431.1 | phage integrase Arm DNA-binding domain-containing protein | - |
| - | 2938781..2938984 | + | 204 | - | - | Antitoxin |
| - | 2938788..2938891 | - | 104 | - | - | Toxin |
| JLF41_RS14140 | 2939033..2939371 | - | 339 | WP_003859787.1 | YebY family protein | - |
| JLF41_RS14145 | 2939388..2940257 | - | 870 | WP_017693249.1 | copper homeostasis membrane protein CopD | - |
| JLF41_RS14150 | 2940259..2940630 | - | 372 | WP_032648690.1 | CopC domain-containing protein YobA | - |
| JLF41_RS14155 | 2940768..2940998 | + | 231 | WP_003859784.1 | DNA polymerase III subunit theta | - |
| JLF41_RS14160 | 2941110..2941760 | + | 651 | WP_015570289.1 | carbon-nitrogen hydrolase family protein | - |
| JLF41_RS14165 | 2941785..2942447 | + | 663 | WP_015570288.1 | exodeoxyribonuclease X | - |
Associated MGEs
| MGE detail |
Similar MGEs |
Relative position |
MGE Type | Cargo ARG | Virulence gene | Coordinates | Length (bp) |
|---|---|---|---|---|---|---|---|
| - | inside | Prophage | - | gtrA / gtrB | 2886728..3004346 | 117618 |
Relative position:
(1) inside: TA loci is completely located inside the MGE;
(2) overlap: TA loci is partially overlapped with the MGE;
(3) flank: The TA loci is located in the 5 kb flanking regions of MGE.
Sequences
Toxin
Download Length: 104 bp
>T35854 NZ_AP022510:c2938891-2938788 [Enterobacter hormaechei]
GGCAAGGCGATTGAGCCTGCATTAATGCCAACTTTTAGCGCACGGCTCTCTCCCAAGAGCCATTTCCCTGGACCGAATAC
AGGAATCGTATTCGGTCTCTTTTT
GGCAAGGCGATTGAGCCTGCATTAATGCCAACTTTTAGCGCACGGCTCTCTCCCAAGAGCCATTTCCCTGGACCGAATAC
AGGAATCGTATTCGGTCTCTTTTT
Antitoxin
Download Length: 204 bp
>AT35854 NZ_AP022510:2938781-2938984 [Enterobacter hormaechei]
AATAGATAAAAAGAGACCGAATACGATTCCTGTATTCGGTCCAGGGAAATGGCTCTTGGGAGAGAGCCGTGCGCTAAAAG
TTGGCATTAATGCAGGCTCAATCGCCTTGCCCTTTAAGAATAGATGACGACGTCAGGTTTTCCAGTCCACAGTAAAAGTG
GTCTGAAAAAAAGCGTCAGAACATCACTAAATGTGAAAAACCGC
AATAGATAAAAAGAGACCGAATACGATTCCTGTATTCGGTCCAGGGAAATGGCTCTTGGGAGAGAGCCGTGCGCTAAAAG
TTGGCATTAATGCAGGCTCAATCGCCTTGCCCTTTAAGAATAGATGACGACGTCAGGTTTTCCAGTCCACAGTAAAAGTG
GTCTGAAAAAAAGCGTCAGAACATCACTAAATGTGAAAAACCGC
