Detailed information of TA system    

insolicoBioinformatically predicted

Overview

TA module


Type II Classification (family/domain) shpAB/BrnT-BrnA
Location 727308..727884 Replicon chromosome
Accession NZ_AP022510
Organism Enterobacter hormaechei strain STN0717-64

Toxin (Protein)


Gene name shpA Uniprot ID A0A800YKM1
Locus tag JLF41_RS03450 Protein ID WP_015572580.1
Coordinates 727308..727595 (+) Length 96 a.a.

Antitoxin (Protein)


Gene name shpB Uniprot ID A0A801DSF4
Locus tag JLF41_RS03455 Protein ID WP_017694570.1
Coordinates 727582..727884 (+) Length 101 a.a.

Genomic Context

Locus tag Coordinates Strand Size (bp) Protein ID Product Description
JLF41_RS03425 722426..723121 + 696 WP_032647138.1 winged helix-turn-helix domain-containing protein -
JLF41_RS03430 723271..723741 + 471 WP_032647140.1 MarR family transcriptional regulator -
JLF41_RS03435 723738..724805 + 1068 WP_026094404.1 HlyD family secretion protein -
JLF41_RS03440 724795..725871 + 1077 WP_015572578.1 DUF2955 domain-containing protein -
JLF41_RS03445 725868..727139 - 1272 WP_032647142.1 DUF445 domain-containing protein -
JLF41_RS03450 727308..727595 + 288 WP_015572580.1 BrnT family toxin Toxin
JLF41_RS03455 727582..727884 + 303 WP_017694570.1 BrnA antitoxin family protein Antitoxin
JLF41_RS03460 727913..728551 - 639 WP_032647144.1 LysE family translocator -
JLF41_RS03465 728590..729342 - 753 WP_015572582.1 AraC family transcriptional regulator -
JLF41_RS03470 729496..730866 + 1371 WP_032647147.1 NAD-dependent succinate-semialdehyde dehydrogenase -
JLF41_RS03475 731044..731589 - 546 WP_006810254.1 porin -

Associated MGEs

MGE
detail		 Similar
MGEs		 Relative
position		 MGE Type Cargo ARG Virulence gene Coordinates Length (bp)


Relative position:
(1) inside: TA loci is completely located inside the MGE;
(2) overlap: TA loci is partially overlapped with the MGE;
(3) flank: The TA loci is located in the 5 kb flanking regions of MGE.


Domains

Predicted by InterproScan

Toxin

Ribonuclease toxin, BrnT, of type II toxin-antitoxin system

(7-88)

Antitoxin

BrnA antitoxin of type II toxin-antitoxin system

(32-93)


Sequences

Toxin        


Download         Length: 96 a.a.        Molecular weight: 11296.81 Da        Isoelectric Point: 7.3587

>T35848 WP_015572580.1 NZ_AP022510:727308-727595 [Enterobacter hormaechei]
MPIEYEWDSNKAKSNLQKHAIRFEDAVLVFDDPCHLSVQDRYENGEFRWQTIGLVQGVIVILVAHTVRFESGDEIIRIIS
ARKADRKERRRYEHR

Download         Length: 288 bp

>T35848 NZ_AP022510:727308-727595 [Enterobacter hormaechei]
ATGCCTATAGAGTATGAATGGGATAGCAATAAGGCGAAAAGCAATCTGCAAAAACACGCCATTCGTTTTGAAGATGCAGT
TCTGGTTTTTGACGATCCCTGCCATTTGTCTGTTCAGGATCGTTATGAAAACGGGGAGTTTCGCTGGCAAACCATTGGTC
TTGTACAGGGTGTTATTGTCATTCTGGTCGCGCACACGGTACGTTTTGAAAGCGGGGATGAAATCATACGTATCATCAGT
GCGCGTAAAGCGGATCGTAAAGAGAGGAGGCGTTATGAGCATCGTTAA

Antitoxin


Download         Length: 101 a.a.        Molecular weight: 11482.13 Da        Isoelectric Point: 10.4094

>AT35848 WP_017694570.1 NZ_AP022510:727582-727884 [Enterobacter hormaechei]
MSIVKHKRGSAPEVSARREAELKALADKPDREIDYSDIPATEDDRWAGAVRGKFYRPLKTQASVRIDADVMEWLKRPGKG
YQTRLNAILREAMLRDQNKK

Download         Length: 303 bp

>AT35848 NZ_AP022510:727582-727884 [Enterobacter hormaechei]
ATGAGCATCGTTAAACATAAACGCGGTAGTGCACCGGAAGTGAGTGCCCGCCGGGAGGCTGAACTCAAAGCGCTGGCGGA
TAAACCCGACAGGGAAATTGATTACAGCGATATACCGGCCACGGAGGATGATCGCTGGGCCGGTGCCGTGCGGGGAAAAT
TCTATCGACCGCTCAAAACTCAGGCATCAGTACGCATTGACGCCGACGTGATGGAGTGGCTTAAACGGCCAGGGAAAGGT
TACCAGACGCGGCTTAATGCCATTTTGCGCGAGGCGATGCTGCGCGATCAGAACAAAAAATAA

Similar Proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
Protein Organism Identities (%) Coverage (%) Ha-value

Structures

Toxin

Source ID Structure

Antitoxin

Source ID Structure

References