Detailed information of TA system
Overview
TA module
| Type | VIII | Classification (family/domain) | SdsR-RyeA/- |
| Location | 2792737..2792882 | Replicon | chromosome |
| Accession | NZ_AP022508 | ||
| Organism | Enterobacter bugandensis strain STN0717-56 | ||
Toxin (RNA)
| Gene name | SdsR | ||
| Locus tag | - | ||
| Coordinates | 2792744..2792847 (-) |
Antitoxin (RNA)
| Gene name | RyeA | ||
| Locus tag | - | ||
| Coordinates | 2792737..2792882 (+) |
Genomic Context
| Locus tag | Coordinates | Strand | Size (bp) | Protein ID | Product | Description |
|---|---|---|---|---|---|---|
| JLD64_RS13275 | 2787922..2789364 | + | 1443 | WP_199886896.1 | 16S rRNA (cytosine(1407)-C(5))-methyltransferase RsmF | - |
| JLD64_RS13280 | 2789470..2789709 | + | 240 | WP_008500472.1 | YebV family protein | - |
| JLD64_RS13285 | 2789744..2790388 | - | 645 | WP_041909471.1 | protein-serine/threonine phosphatase | - |
| JLD64_RS13290 | 2790557..2791498 | + | 942 | WP_048958966.1 | VirK/YbjX family protein | - |
| JLD64_RS13295 | 2791671..2792546 | + | 876 | WP_199886913.1 | benzoate transporter | - |
| - | 2792737..2792882 | + | 146 | - | - | Antitoxin |
| - | 2792744..2792847 | - | 104 | - | - | Toxin |
| JLD64_RS13300 | 2792987..2793325 | - | 339 | WP_028013604.1 | YebY family protein | - |
| JLD64_RS13305 | 2793342..2794211 | - | 870 | WP_063437379.1 | copper homeostasis membrane protein CopD | - |
| JLD64_RS13310 | 2794213..2794584 | - | 372 | WP_069733025.1 | CopC domain-containing protein YobA | - |
| JLD64_RS13315 | 2794721..2794951 | + | 231 | WP_008500465.1 | DNA polymerase III subunit theta | - |
| JLD64_RS13320 | 2795062..2795712 | + | 651 | WP_049138839.1 | carbon-nitrogen hydrolase family protein | - |
| JLD64_RS13325 | 2795737..2796399 | + | 663 | WP_025756911.1 | exodeoxyribonuclease X | - |
Associated MGEs
| MGE detail |
Similar MGEs |
Relative position |
MGE Type | Cargo ARG | Virulence gene | Coordinates | Length (bp) |
|---|
Relative position:
(1) inside: TA loci is completely located inside the MGE;
(2) overlap: TA loci is partially overlapped with the MGE;
(3) flank: The TA loci is located in the 5 kb flanking regions of MGE.
Sequences
Toxin
Download Length: 104 bp
>T35835 NZ_AP022508:c2792847-2792744 [Enterobacter bugandensis]
GGCAAGGCGACTTAGCCTGCATTAATGCCAACTTTTAGCGCACGGCTCTCTCCCAAGAGCCATTTCCCTGGACCGAATAC
AGGAATCGTATTCGGTCTCTTTTT
GGCAAGGCGACTTAGCCTGCATTAATGCCAACTTTTAGCGCACGGCTCTCTCCCAAGAGCCATTTCCCTGGACCGAATAC
AGGAATCGTATTCGGTCTCTTTTT
Antitoxin
Download Length: 146 bp
>AT35835 NZ_AP022508:2792737-2792882 [Enterobacter bugandensis]
AATAGATAAAAAGAGACCGAATACGATTCCTGTATTCGGTCCAGGGAAATGGCTCTTGGGAGAGAGCCGTGCGCTAAAAG
TTGGCATTAATGCAGGCTAAGTCGCCTTGCCTTTTAAGAATAGATGACGACGCCAGGTTTTCCAGT
AATAGATAAAAAGAGACCGAATACGATTCCTGTATTCGGTCCAGGGAAATGGCTCTTGGGAGAGAGCCGTGCGCTAAAAG
TTGGCATTAATGCAGGCTAAGTCGCCTTGCCTTTTAAGAATAGATGACGACGCCAGGTTTTCCAGT
