Detailed information of TA system
Overview
TA module
| Type | VIII | Classification (family/domain) | SdsR-RyeA/- |
| Location | 2791604..2791758 | Replicon | chromosome |
| Accession | NZ_AP022498 | ||
| Organism | Enterobacter kobei strain STN0717-53 | ||
Toxin (RNA)
| Gene name | SdsR | ||
| Locus tag | - | ||
| Coordinates | 2791620..2791723 (-) |
Antitoxin (RNA)
| Gene name | RyeA | ||
| Locus tag | - | ||
| Coordinates | 2791604..2791758 (+) |
Genomic Context
| Locus tag | Coordinates | Strand | Size (bp) | Protein ID | Product | Description |
|---|---|---|---|---|---|---|
| JLH17_RS13270 | 2787881..2789323 | + | 1443 | WP_045268891.1 | 16S rRNA (cytosine(1407)-C(5))-methyltransferase RsmF | - |
| JLH17_RS13275 | 2789429..2789668 | + | 240 | WP_008500472.1 | YebV family protein | - |
| JLH17_RS13280 | 2789703..2790347 | - | 645 | WP_023338429.1 | protein-serine/threonine phosphatase | - |
| JLH17_RS13285 | 2790515..2791456 | + | 942 | WP_196359869.1 | VirK/YbjX family protein | - |
| - | 2791604..2791758 | + | 155 | - | - | Antitoxin |
| - | 2791620..2791723 | - | 104 | - | - | Toxin |
| JLH17_RS13290 | 2791862..2792200 | - | 339 | WP_014884299.1 | YebY family protein | - |
| JLH17_RS13295 | 2792217..2793086 | - | 870 | WP_045268893.1 | copper homeostasis membrane protein CopD | - |
| JLH17_RS13300 | 2793088..2793459 | - | 372 | WP_045268894.1 | CopC domain-containing protein YobA | - |
| JLH17_RS13305 | 2793597..2793827 | + | 231 | WP_013096102.1 | DNA polymerase III subunit theta | - |
| JLH17_RS13310 | 2793938..2794588 | + | 651 | WP_045268895.1 | carbon-nitrogen hydrolase family protein | - |
| JLH17_RS13315 | 2794613..2795275 | + | 663 | WP_014884303.1 | exodeoxyribonuclease X | - |
Associated MGEs
| MGE detail |
Similar MGEs |
Relative position |
MGE Type | Cargo ARG | Virulence gene | Coordinates | Length (bp) |
|---|
Relative position:
(1) inside: TA loci is completely located inside the MGE;
(2) overlap: TA loci is partially overlapped with the MGE;
(3) flank: The TA loci is located in the 5 kb flanking regions of MGE.
Sequences
Toxin
Download Length: 104 bp
>T35820 NZ_AP022498:c2791723-2791620 [Enterobacter kobei]
GGCAAGGCGACTTAGCCTGCATTAATGCCAACTTTTAGCGCACGGCTCTCTCCCAAGAGCCATTTCCCTGGACCGAATAC
AGGAATCGTATTCGGTCTCTTTTT
GGCAAGGCGACTTAGCCTGCATTAATGCCAACTTTTAGCGCACGGCTCTCTCCCAAGAGCCATTTCCCTGGACCGAATAC
AGGAATCGTATTCGGTCTCTTTTT
Antitoxin
Download Length: 155 bp
>AT35820 NZ_AP022498:2791604-2791758 [Enterobacter kobei]
TGTCTTTCATACAGATAAAAAGAGACCGAATACGATTCCTGTATTCGGTCCAGGGAAATGGCTCTTGGGAGAGAGCCGTG
CGCTAAAAGTTGGCATTAATGCAGGCTAAGTCGCCTTGCCTTTTAAGAATAGATGACGACGCCAGGTTTTCCAGT
TGTCTTTCATACAGATAAAAAGAGACCGAATACGATTCCTGTATTCGGTCCAGGGAAATGGCTCTTGGGAGAGAGCCGTG
CGCTAAAAGTTGGCATTAATGCAGGCTAAGTCGCCTTGCCTTTTAAGAATAGATGACGACGCCAGGTTTTCCAGT
