Detailed information of TA system
Overview
TA module
| Type | VIII | Classification (family/domain) | SdsR-RyeA/- |
| Location | 2112751..2112894 | Replicon | chromosome |
| Accession | NZ_AP022494 | ||
| Organism | Citrobacter portucalensis strain STN0717-36 | ||
Toxin (RNA)
| Gene name | SdsR | ||
| Locus tag | - | ||
| Coordinates | 2112786..2112889 (+) |
Antitoxin (RNA)
| Gene name | RyeA | ||
| Locus tag | - | ||
| Coordinates | 2112751..2112894 (-) |
Genomic Context
| Locus tag | Coordinates | Strand | Size (bp) | Protein ID | Product | Description |
|---|---|---|---|---|---|---|
| JLF47_RS09990 | 2109198..2109860 | - | 663 | WP_003833802.1 | exodeoxyribonuclease X | - |
| JLF47_RS09995 | 2109884..2110540 | - | 657 | WP_003833801.1 | carbon-nitrogen hydrolase family protein | - |
| JLF47_RS10000 | 2110647..2110877 | - | 231 | WP_003833800.1 | DNA polymerase III subunit theta | - |
| JLF47_RS10005 | 2111021..2111395 | + | 375 | WP_003833799.1 | CopC domain-containing protein YobA | - |
| JLF47_RS10010 | 2111399..2112271 | + | 873 | WP_003833795.1 | copper homeostasis membrane protein CopD | - |
| JLF47_RS10015 | 2112292..2112630 | + | 339 | WP_003833793.1 | YebY family protein | - |
| - | 2112751..2112894 | - | 144 | - | - | Antitoxin |
| - | 2112786..2112889 | + | 104 | - | - | Toxin |
| JLF47_RS10020 | 2112967..2114052 | - | 1086 | WP_153752806.1 | phage integrase Arm DNA-binding domain-containing protein | - |
| JLF47_RS10025 | 2114021..2114293 | - | 273 | WP_016156226.1 | hypothetical protein | - |
| JLF47_RS10030 | 2114358..2114600 | - | 243 | WP_003841647.1 | DUF4060 family protein | - |
| JLF47_RS10035 | 2114783..2115127 | - | 345 | WP_054528498.1 | hypothetical protein | - |
| JLF47_RS10040 | 2115162..2116247 | - | 1086 | WP_200921465.1 | recombinase RecT | - |
Associated MGEs
| MGE detail |
Similar MGEs |
Relative position |
MGE Type | Cargo ARG | Virulence gene | Coordinates | Length (bp) |
|---|---|---|---|---|---|---|---|
| - | inside | Prophage | - | - | 2105547..2180610 | 75063 |
Relative position:
(1) inside: TA loci is completely located inside the MGE;
(2) overlap: TA loci is partially overlapped with the MGE;
(3) flank: The TA loci is located in the 5 kb flanking regions of MGE.
Sequences
Toxin
Download Length: 104 bp
>T35798 NZ_AP022494:2112786-2112889 [Citrobacter portucalensis]
GGCAGGGTAACTTAGCCTGCATTAATGCCAACTTTTAGCGCACGGCTCTCTCCCAAGAGCCATTTCCCTGGACCGAATAC
AGGAATCGTATTCGGTCTCTTTTT
GGCAGGGTAACTTAGCCTGCATTAATGCCAACTTTTAGCGCACGGCTCTCTCCCAAGAGCCATTTCCCTGGACCGAATAC
AGGAATCGTATTCGGTCTCTTTTT
Antitoxin
Download Length: 144 bp
>AT35798 NZ_AP022494:c2112894-2112751 [Citrobacter portucalensis]
CACATAAAAAGAGACCGAATACGATTCCTGTATTCGGTCCAGGGAAATGGCTCTTGGGAGAGAGCCGTGCGCTAAAAGTT
GGCATTAATGCAGGCTAAGTTACCCTGCCATTTAAGAATAGATGACAGCGCCAGGTTTTCCAGT
CACATAAAAAGAGACCGAATACGATTCCTGTATTCGGTCCAGGGAAATGGCTCTTGGGAGAGAGCCGTGCGCTAAAAGTT
GGCATTAATGCAGGCTAAGTTACCCTGCCATTTAAGAATAGATGACAGCGCCAGGTTTTCCAGT
