Detailed information of TA system
Overview
TA module
| Type | VIII | Classification (family/domain) | SdsR-RyeA/- |
| Location | 2154775..2155046 | Replicon | chromosome |
| Accession | NZ_AP022478 | ||
| Organism | Escherichia coli strain STN0717-11 | ||
Toxin (RNA)
| Gene name | SdsR | ||
| Locus tag | - | ||
| Coordinates | 2154905..2155008 (+) |
Antitoxin (RNA)
| Gene name | RyeA | ||
| Locus tag | - | ||
| Coordinates | 2154775..2155046 (-) |
Genomic Context
| Locus tag | Coordinates | Strand | Size (bp) | Protein ID | Product | Description |
|---|---|---|---|---|---|---|
| JLF30_RS09980 | 2151330..2151992 | - | 663 | WP_000944256.1 | exodeoxyribonuclease X | - |
| JLF30_RS09985 | 2152016..2152672 | - | 657 | WP_000011653.1 | carbon-nitrogen hydrolase family protein | - |
| JLF30_RS09990 | 2152774..2153004 | - | 231 | WP_000916763.1 | DNA polymerase III subunit theta | - |
| JLF30_RS09995 | 2153143..2153517 | + | 375 | WP_000168743.1 | CopC domain-containing protein YobA | - |
| JLF30_RS10000 | 2153521..2154393 | + | 873 | WP_001587145.1 | copper homeostasis membrane protein CopD | - |
| JLF30_RS10005 | 2154406..2154747 | + | 342 | WP_000976481.1 | YebY family protein | - |
| - | 2154775..2155046 | - | 272 | - | - | Antitoxin |
| - | 2154905..2155008 | + | 104 | - | - | Toxin |
| JLF30_RS10010 | 2155143..2155799 | + | 657 | WP_000812712.1 | protein-serine/threonine phosphatase | - |
| JLF30_RS10015 | 2155800..2155991 | - | 192 | WP_001296140.1 | YebW family protein | - |
| JLF30_RS10020 | 2156096..2156332 | - | 237 | WP_001295499.1 | DUF1480 family protein | - |
| JLF30_RS10025 | 2156450..2157889 | - | 1440 | WP_001309555.1 | 16S rRNA (cytosine(1407)-C(5))-methyltransferase RsmF | - |
Associated MGEs
| MGE detail |
Similar MGEs |
Relative position |
MGE Type | Cargo ARG | Virulence gene | Coordinates | Length (bp) |
|---|---|---|---|---|---|---|---|
| - | inside | Prophage | - | - | 2145602..2170886 | 25284 |
Relative position:
(1) inside: TA loci is completely located inside the MGE;
(2) overlap: TA loci is partially overlapped with the MGE;
(3) flank: The TA loci is located in the 5 kb flanking regions of MGE.
Sequences
Toxin
Download Length: 104 bp
>T35716 NZ_AP022478:2154905-2155008 [Escherichia coli]
GGCAAGGCAACTAAGCCTGCATTAATGCCAACTTTTAGCGCACGGCTCTCTCCCAAGAGCCATTTCCCTGGACCGAATAC
AGGAATCGTGTTCGGTCTCTTTTT
GGCAAGGCAACTAAGCCTGCATTAATGCCAACTTTTAGCGCACGGCTCTCTCCCAAGAGCCATTTCCCTGGACCGAATAC
AGGAATCGTGTTCGGTCTCTTTTT
Antitoxin
Download Length: 272 bp
>AT35716 NZ_AP022478:c2155046-2154775 [Escherichia coli]
AAAGTCAGCGAAGGGAATGCTTCTGGCTTTTAACAGATAAAAAGAGACCGAACACGATTCCTGTATTCGGTCCAGGGAAA
TGGCTCTTGGGAGAGAGCCGTGCGCTAAAAGTTGGCATTAATGCAGGCTTAGTTGCCTTGCCCTTTAAGAATAGATGACG
ACGCCAGGTTTTCCAGTTTGCGTGCAAAATGGTCAATAAAAAGCGCGGTGGTCATCAGCTTAAATGTTAAAAACCGCCCG
TTCTGGTGAAAGAACTGAGGCGGTTTTTTTAT
AAAGTCAGCGAAGGGAATGCTTCTGGCTTTTAACAGATAAAAAGAGACCGAACACGATTCCTGTATTCGGTCCAGGGAAA
TGGCTCTTGGGAGAGAGCCGTGCGCTAAAAGTTGGCATTAATGCAGGCTTAGTTGCCTTGCCCTTTAAGAATAGATGACG
ACGCCAGGTTTTCCAGTTTGCGTGCAAAATGGTCAATAAAAAGCGCGGTGGTCATCAGCTTAAATGTTAAAAACCGCCCG
TTCTGGTGAAAGAACTGAGGCGGTTTTTTTAT
