Detailed information of TA system
Bioinformatically predictedOverview
TA module
Type | II | Classification (family/domain) | PfiT-PfiA/ParE(toxin) |
Location | 270713..271320 | Replicon | chromosome |
Accession | NZ_AP022473 | ||
Organism | Pseudomonas monteilii strain STW0522-72 |
Toxin (Protein)
Gene name | PfiT | Uniprot ID | - |
Locus tag | JLF49_RS01180 | Protein ID | WP_200928952.1 |
Coordinates | 270713..271054 (-) | Length | 114 a.a. |
Antitoxin (Protein)
Gene name | PfiA | Uniprot ID | A0A923H1P8 |
Locus tag | JLF49_RS01185 | Protein ID | WP_025754068.1 |
Coordinates | 271072..271320 (-) | Length | 83 a.a. |
Genomic Context
Locus tag | Coordinates | Strand | Size (bp) | Protein ID | Product | Description |
---|---|---|---|---|---|---|
JLF49_RS01165 | 266146..267513 | - | 1368 | WP_164524045.1 | HAMP domain-containing protein | - |
JLF49_RS01170 | 267515..268237 | - | 723 | WP_060501217.1 | response regulator | - |
JLF49_RS01175 | 268378..270675 | + | 2298 | WP_104833620.1 | TonB-dependent siderophore receptor | - |
JLF49_RS01180 | 270713..271054 | - | 342 | WP_200928952.1 | type II toxin-antitoxin system RelE/ParE family toxin | Toxin |
JLF49_RS01185 | 271072..271320 | - | 249 | WP_025754068.1 | type II toxin-antitoxin system Phd/YefM family antitoxin | Antitoxin |
JLF49_RS01190 | 272043..273218 | - | 1176 | WP_200928953.1 | integrase | - |
JLF49_RS01195 | 273529..273762 | - | 234 | WP_200928954.1 | hypothetical protein | - |
JLF49_RS01200 | 273755..274207 | - | 453 | WP_200928955.1 | hypothetical protein | - |
JLF49_RS01205 | 274197..274400 | - | 204 | WP_200928956.1 | hypothetical protein | - |
JLF49_RS01210 | 274393..274941 | - | 549 | WP_200928957.1 | hypothetical protein | - |
JLF49_RS01215 | 274938..275213 | - | 276 | WP_200928958.1 | hypothetical protein | - |
JLF49_RS01220 | 275286..275453 | - | 168 | WP_200928959.1 | hypothetical protein | - |
JLF49_RS01225 | 275479..275793 | - | 315 | WP_200928960.1 | hypothetical protein | - |
Associated MGEs
MGE detail |
Similar MGEs |
Relative position |
MGE Type | Cargo ARG | Virulence gene | Coordinates | Length (bp) |
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Relative position:
(1) inside: TA loci is completely located inside the MGE;
(2) overlap: TA loci is partially overlapped with the MGE;
(3) flank: The TA loci is located in the 5 kb flanking regions of MGE.
Sequences
Toxin
Download Length: 114 a.a. Molecular weight: 12536.37 Da Isoelectric Point: 6.3199
>T35706 WP_200928952.1 NZ_AP022473:c271054-270713 [Pseudomonas monteilii]
MPTIRFTHSASQSIEDQVHHLAVYHGTAAALEKITTLVDTIEHRLAAAPVGYPVSPQASGLGVMQYRELNVDGYRVFYEV
IETDNAIAVGLVLRQKQSVEQALIRYCLIYPLP
MPTIRFTHSASQSIEDQVHHLAVYHGTAAALEKITTLVDTIEHRLAAAPVGYPVSPQASGLGVMQYRELNVDGYRVFYEV
IETDNAIAVGLVLRQKQSVEQALIRYCLIYPLP
Download Length: 342 bp
>T35706 NZ_AP022473:c271054-270713 [Pseudomonas monteilii]
ATGCCGACCATACGCTTCACCCATTCCGCCTCTCAGAGCATCGAAGATCAAGTCCACCATCTGGCCGTCTATCACGGTAC
CGCAGCGGCACTTGAGAAAATCACCACACTGGTCGACACCATTGAGCACCGGCTGGCTGCCGCGCCCGTGGGTTACCCGG
TCAGCCCACAAGCGAGCGGGCTGGGTGTCATGCAGTATCGTGAGCTGAATGTCGACGGGTACAGGGTGTTCTACGAAGTG
ATCGAAACCGACAATGCCATTGCCGTGGGGTTGGTTCTCAGGCAAAAGCAGAGTGTTGAACAGGCATTGATTCGGTATTG
CCTGATTTACCCATTACCTTGA
ATGCCGACCATACGCTTCACCCATTCCGCCTCTCAGAGCATCGAAGATCAAGTCCACCATCTGGCCGTCTATCACGGTAC
CGCAGCGGCACTTGAGAAAATCACCACACTGGTCGACACCATTGAGCACCGGCTGGCTGCCGCGCCCGTGGGTTACCCGG
TCAGCCCACAAGCGAGCGGGCTGGGTGTCATGCAGTATCGTGAGCTGAATGTCGACGGGTACAGGGTGTTCTACGAAGTG
ATCGAAACCGACAATGCCATTGCCGTGGGGTTGGTTCTCAGGCAAAAGCAGAGTGTTGAACAGGCATTGATTCGGTATTG
CCTGATTTACCCATTACCTTGA
Antitoxin
Download Length: 83 a.a. Molecular weight: 9307.61 Da Isoelectric Point: 6.4706
>AT35706 WP_025754068.1 NZ_AP022473:c271320-271072 [Pseudomonas monteilii]
MRVETISYLKRHAADLDLEEPMVVTQNGVPAYVVESYADRKQRDEAIALVKLLAIGSREYAQGKHSSAEDLKTRLLKKFS
EE
MRVETISYLKRHAADLDLEEPMVVTQNGVPAYVVESYADRKQRDEAIALVKLLAIGSREYAQGKHSSAEDLKTRLLKKFS
EE
Download Length: 249 bp
>AT35706 NZ_AP022473:c271320-271072 [Pseudomonas monteilii]
ATGCGAGTAGAAACGATCAGCTACCTGAAACGCCATGCTGCTGACCTGGACCTGGAAGAACCCATGGTCGTGACACAGAA
CGGTGTGCCTGCCTATGTGGTCGAGTCCTACGCGGATCGCAAGCAACGGGATGAAGCCATAGCCTTGGTGAAACTGCTCG
CCATCGGTTCCCGTGAGTATGCTCAGGGCAAACACAGCTCGGCCGAAGACCTCAAGACTCGCCTTCTCAAGAAATTTTCT
GAGGAGTAA
ATGCGAGTAGAAACGATCAGCTACCTGAAACGCCATGCTGCTGACCTGGACCTGGAAGAACCCATGGTCGTGACACAGAA
CGGTGTGCCTGCCTATGTGGTCGAGTCCTACGCGGATCGCAAGCAACGGGATGAAGCCATAGCCTTGGTGAAACTGCTCG
CCATCGGTTCCCGTGAGTATGCTCAGGGCAAACACAGCTCGGCCGAAGACCTCAAGACTCGCCTTCTCAAGAAATTTTCT
GAGGAGTAA
Similar Proteins
Only experimentally validated proteins are listed.
Protein | Organism | Identities (%) | Coverage (%) | Ha-value |
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Protein | Organism | Identities (%) | Coverage (%) | Ha-value |
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Structures
Toxin
Source | ID | Structure |
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Antitoxin
Source | ID | Structure |
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