Detailed information of TA system
Overview
TA module
| Type | VIII | Classification (family/domain) | SdsR-RyeA/- |
| Location | 2870442..2870587 | Replicon | chromosome |
| Accession | NZ_AP022465 | ||
| Organism | Enterobacter roggenkampii strain STW0522-66 | ||
Toxin (RNA)
| Gene name | SdsR | ||
| Locus tag | - | ||
| Coordinates | 2870449..2870552 (-) |
Antitoxin (RNA)
| Gene name | RyeA | ||
| Locus tag | - | ||
| Coordinates | 2870442..2870587 (+) |
Genomic Context
| Locus tag | Coordinates | Strand | Size (bp) | Protein ID | Product | Description |
|---|---|---|---|---|---|---|
| JLF42_RS13670 | 2865658..2867106 | + | 1449 | WP_200925662.1 | 16S rRNA (cytosine(1407)-C(5))-methyltransferase RsmF | - |
| JLF42_RS13675 | 2867213..2867452 | + | 240 | WP_008500472.1 | YebV family protein | - |
| JLF42_RS13680 | 2867487..2868131 | - | 645 | WP_055321131.1 | protein-serine/threonine phosphatase | - |
| JLF42_RS13685 | 2868298..2869239 | + | 942 | WP_055321130.1 | VirK/YbjX family protein | - |
| JLF42_RS13690 | 2869545..2870036 | - | 492 | WP_023293949.1 | hypothetical protein | - |
| - | 2870442..2870587 | + | 146 | - | - | Antitoxin |
| - | 2870449..2870552 | - | 104 | - | - | Toxin |
| JLF42_RS13695 | 2870691..2871029 | - | 339 | WP_008500468.1 | YebY family protein | - |
| JLF42_RS13700 | 2871046..2871915 | - | 870 | WP_023325511.1 | copper homeostasis membrane protein CopD | - |
| JLF42_RS13705 | 2871917..2872288 | - | 372 | WP_023344420.1 | CopC domain-containing protein YobA | - |
| JLF42_RS13710 | 2872426..2872656 | + | 231 | WP_008500465.1 | DNA polymerase III subunit theta | - |
| JLF42_RS13715 | 2872767..2873417 | + | 651 | WP_055321129.1 | carbon-nitrogen hydrolase family protein | - |
| JLF42_RS13720 | 2873442..2874104 | + | 663 | WP_055321128.1 | exodeoxyribonuclease X | - |
Associated MGEs
| MGE detail |
Similar MGEs |
Relative position |
MGE Type | Cargo ARG | Virulence gene | Coordinates | Length (bp) |
|---|
Relative position:
(1) inside: TA loci is completely located inside the MGE;
(2) overlap: TA loci is partially overlapped with the MGE;
(3) flank: The TA loci is located in the 5 kb flanking regions of MGE.
Sequences
Toxin
Download Length: 104 bp
>T35694 NZ_AP022465:c2870552-2870449 [Enterobacter roggenkampii]
GGCAAGGCGACTTAGCCTGCATTAATGCCAACTTTTAGCGCACGGCTCTCTCCCAAGAGCCATTTCCCTGGACCGAATAC
AGGAATCGTATTCGGTCTCTTTTT
GGCAAGGCGACTTAGCCTGCATTAATGCCAACTTTTAGCGCACGGCTCTCTCCCAAGAGCCATTTCCCTGGACCGAATAC
AGGAATCGTATTCGGTCTCTTTTT
Antitoxin
Download Length: 146 bp
>AT35694 NZ_AP022465:2870442-2870587 [Enterobacter roggenkampii]
AACAGATAAAAAGAGACCGAATACGATTCCTGTATTCGGTCCAGGGAAATGGCTCTTGGGAGAGAGCCGTGCGCTAAAAG
TTGGCATTAATGCAGGCTAAGTCGCCTTGCCTTTTAAGAATAGATGACGACGCCAGGTTTTCCAGT
AACAGATAAAAAGAGACCGAATACGATTCCTGTATTCGGTCCAGGGAAATGGCTCTTGGGAGAGAGCCGTGCGCTAAAAG
TTGGCATTAATGCAGGCTAAGTCGCCTTGCCTTTTAAGAATAGATGACGACGCCAGGTTTTCCAGT
