Detailed information of TA system
Overview
TA module
| Type | VIII | Classification (family/domain) | SdsR-RyeA/- |
| Location | 2926729..2926883 | Replicon | chromosome |
| Accession | NZ_AP022452 | ||
| Organism | Enterobacter kobei strain STW0522-62 | ||
Toxin (RNA)
| Gene name | SdsR | ||
| Locus tag | - | ||
| Coordinates | 2926745..2926848 (-) |
Antitoxin (RNA)
| Gene name | RyeA | ||
| Locus tag | - | ||
| Coordinates | 2926729..2926883 (+) |
Genomic Context
| Locus tag | Coordinates | Strand | Size (bp) | Protein ID | Product | Description |
|---|---|---|---|---|---|---|
| JLF39_RS14030 | 2923005..2924447 | + | 1443 | WP_045134186.1 | 16S rRNA (cytosine(1407)-C(5))-methyltransferase RsmF | - |
| JLF39_RS14035 | 2924554..2924793 | + | 240 | WP_008500472.1 | YebV family protein | - |
| JLF39_RS14040 | 2924828..2925472 | - | 645 | WP_014884297.1 | protein-serine/threonine phosphatase | - |
| JLF39_RS14045 | 2925640..2926581 | + | 942 | WP_200924298.1 | VirK/YbjX family protein | - |
| - | 2926729..2926883 | + | 155 | - | - | Antitoxin |
| - | 2926745..2926848 | - | 104 | - | - | Toxin |
| JLF39_RS14050 | 2926988..2927326 | - | 339 | WP_014884299.1 | YebY family protein | - |
| JLF39_RS14055 | 2927343..2928212 | - | 870 | WP_023330712.1 | copper homeostasis membrane protein CopD | - |
| JLF39_RS14060 | 2928214..2928585 | - | 372 | WP_200924299.1 | CopC domain-containing protein YobA | - |
| JLF39_RS14065 | 2928723..2928953 | + | 231 | WP_200924300.1 | DNA polymerase III subunit theta | - |
| JLF39_RS14070 | 2929064..2929714 | + | 651 | WP_014884302.1 | carbon-nitrogen hydrolase family protein | - |
| JLF39_RS14075 | 2929739..2930401 | + | 663 | WP_014884303.1 | exodeoxyribonuclease X | - |
Associated MGEs
| MGE detail |
Similar MGEs |
Relative position |
MGE Type | Cargo ARG | Virulence gene | Coordinates | Length (bp) |
|---|
Relative position:
(1) inside: TA loci is completely located inside the MGE;
(2) overlap: TA loci is partially overlapped with the MGE;
(3) flank: The TA loci is located in the 5 kb flanking regions of MGE.
Sequences
Toxin
Download Length: 104 bp
>T35675 NZ_AP022452:c2926848-2926745 [Enterobacter kobei]
GGCAAGGCGACTTAGCCTGCATTAATGCCAACTTTTAGCGCACGGCTCTCTCCCAAGAGCCATTTCCCTGGACCGAATAC
AGGAATCGTATTCGGTCTCTTTTT
GGCAAGGCGACTTAGCCTGCATTAATGCCAACTTTTAGCGCACGGCTCTCTCCCAAGAGCCATTTCCCTGGACCGAATAC
AGGAATCGTATTCGGTCTCTTTTT
Antitoxin
Download Length: 155 bp
>AT35675 NZ_AP022452:2926729-2926883 [Enterobacter kobei]
TGTCTTTCATACAGATAAAAAGAGACCGAATACGATTCCTGTATTCGGTCCAGGGAAATGGCTCTTGGGAGAGAGCCGTG
CGCTAAAAGTTGGCATTAATGCAGGCTAAGTCGCCTTGCCTTTTAAGAATAGATGACGACGCCAGGTTTTCCAGT
TGTCTTTCATACAGATAAAAAGAGACCGAATACGATTCCTGTATTCGGTCCAGGGAAATGGCTCTTGGGAGAGAGCCGTG
CGCTAAAAGTTGGCATTAATGCAGGCTAAGTCGCCTTGCCTTTTAAGAATAGATGACGACGCCAGGTTTTCCAGT
