35673

Detailed information of TA system    

insolicoBioinformatically predicted

Overview

TA module


Type II Classification (family/domain) Hha-TomB/-
Location 1188617..1189237 Replicon chromosome
Accession NZ_AP022452
Organism Enterobacter kobei strain STW0522-62

Toxin (Protein)


Gene name Hha Uniprot ID A0A2W0G488
Locus tag JLF39_RS05685 Protein ID WP_014882802.1
Coordinates 1188617..1188835 (-) Length 73 a.a.

Antitoxin (Protein)


Gene name TomB Uniprot ID V3PBI9
Locus tag JLF39_RS05690 Protein ID WP_008499288.1
Coordinates 1188863..1189237 (-) Length 125 a.a.

Genomic Context

Locus tag Coordinates Strand Size (bp) Protein ID Product Description
JLF39_RS05655 1184626..1184886 + 261 WP_010428154.1 type B 50S ribosomal protein L31 -
JLF39_RS05660 1184889..1185029 + 141 WP_003859006.1 type B 50S ribosomal protein L36 -
JLF39_RS05665 1185026..1185736 - 711 WP_014882798.1 GNAT family N-acetyltransferase -
JLF39_RS05670 1185838..1187298 + 1461 WP_200924925.1 PLP-dependent aminotransferase family protein -
JLF39_RS05675 1187270..1187737 - 468 WP_014882800.1 membrane protein -
JLF39_RS05680 1187856..1188407 - 552 WP_014882801.1 maltose O-acetyltransferase -
JLF39_RS05685 1188617..1188835 - 219 WP_014882802.1 hemolysin expression modulator Hha Toxin
JLF39_RS05690 1188863..1189237 - 375 WP_008499288.1 Hha toxicity modulator TomB Antitoxin
JLF39_RS05695 1189749..1192895 - 3147 WP_014882803.1 multidrug efflux RND transporter permease subunit -
JLF39_RS05700 1192918..1194111 - 1194 WP_088126525.1 multidrug efflux RND transporter periplasmic adaptor subunit AcrA -

Associated MGEs

MGE
detail		 Similar
MGEs		 Relative
position		 MGE Type Cargo ARG Virulence gene Coordinates Length (bp)


Relative position:
(1) inside: TA loci is completely located inside the MGE;
(2) overlap: TA loci is partially overlapped with the MGE;
(3) flank: The TA loci is located in the 5 kb flanking regions of MGE.


Domains

Predicted by InterproScan

Toxin

Haemolysin expression modulating, HHA

(13-69)

Antitoxin

Biofilm formation regulator YbaJ

(1-114)


Sequences

Toxin        


Download         Length: 73 a.a.        Molecular weight: 8612.00 Da        Isoelectric Point: 8.9008

>T35673 WP_014882802.1 NZ_AP022452:c1188835-1188617 [Enterobacter kobei]
MSEKPLTKVDYLMRLRRCQSIDTLERVIEKNKYELSDNELAVFYSAADHRLAELTMNKLYDKIPTSVWKFVR

Download         Length: 219 bp

>T35673 NZ_AP022452:c1188835-1188617 [Enterobacter kobei]
ATGTCTGAAAAACCACTCACAAAGGTCGATTATTTGATGCGCTTACGTCGTTGTCAGTCAATTGACACCCTCGAACGTGT
CATTGAAAAGAATAAATACGAGCTTTCTGATAATGAACTGGCGGTATTTTATTCAGCTGCTGACCATCGCCTCGCTGAGC
TAACGATGAATAAGTTATATGACAAAATCCCCACATCCGTGTGGAAATTTGTTCGTTGA

Antitoxin


Download         Length: 125 a.a.        Molecular weight: 14481.28 Da        Isoelectric Point: 4.8886

>AT35673 WP_008499288.1 NZ_AP022452:c1189237-1188863 [Enterobacter kobei]
MDEYSPKRHDIAQLKFLCESLYHDCLANLDESNHGWVNDPTSAINLQLNELIEHIATFALNYKIKYNEDNKLIEQIDEYL
DDTFMLFSSYGINAQDLQKWRKSGNRLFRCFVNVSRANPVSLSC

Download         Length: 375 bp

>AT35673 NZ_AP022452:c1189237-1188863 [Enterobacter kobei]
ATGGACGAGTACTCGCCAAAACGGCATGATATCGCGCAGTTGAAATTTCTCTGCGAATCCTTGTACCATGACTGCCTTGC
CAATCTTGATGAAAGTAACCATGGCTGGGTAAACGATCCAACGTCTGCGATCAATTTACAGTTGAACGAGCTTATCGAGC
ATATCGCTACCTTCGCACTTAATTATAAAATTAAGTACAATGAAGATAATAAGCTCATTGAGCAAATTGATGAATACCTG
GACGACACCTTTATGTTGTTCAGTAGTTACGGCATTAACGCTCAGGATTTGCAAAAATGGCGCAAATCGGGAAACCGACT
ATTCCGCTGTTTCGTCAACGTGAGCAGAGCTAACCCCGTTAGCCTTTCCTGTTAA

Similar Proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
Protein Organism Identities (%) Coverage (%) Ha-value

Structures

Toxin

Source ID Structure
AlphaFold DB A0A2W0G488

Antitoxin

Source ID Structure
AlphaFold DB V3PBI9

References