Detailed information of TA system
Overview
TA module
| Type | VIII | Classification (family/domain) | SdsR-RyeA/- |
| Location | 2932100..2932244 | Replicon | chromosome |
| Accession | NZ_AP022446 | ||
| Organism | Enterobacter kobei strain STW0522-60 | ||
Toxin (RNA)
| Gene name | SdsR | ||
| Locus tag | - | ||
| Coordinates | 2932106..2932209 (-) |
Antitoxin (RNA)
| Gene name | RyeA | ||
| Locus tag | - | ||
| Coordinates | 2932100..2932244 (+) |
Genomic Context
| Locus tag | Coordinates | Strand | Size (bp) | Protein ID | Product | Description |
|---|---|---|---|---|---|---|
| JLF31_RS14270 | 2927717..2928427 | - | 711 | Protein_2796 | EAL domain-containing protein | - |
| JLF31_RS14275 | 2928830..2929810 | - | 981 | WP_200923523.1 | IS5 family transposase | - |
| JLF31_RS14280 | 2929845..2930816 | + | 972 | WP_200923919.1 | VirK/YbjX family protein | - |
| JLF31_RS14285 | 2930991..2931887 | + | 897 | WP_058690982.1 | benzoate transporter | - |
| - | 2932100..2932244 | + | 145 | - | - | Antitoxin |
| - | 2932106..2932209 | - | 104 | - | - | Toxin |
| JLF31_RS14290 | 2932348..2932686 | - | 339 | WP_014884299.1 | YebY family protein | - |
| JLF31_RS14295 | 2932703..2933572 | - | 870 | WP_023330712.1 | copper homeostasis membrane protein CopD | - |
| JLF31_RS14300 | 2933574..2933945 | - | 372 | WP_058690983.1 | CopC domain-containing protein YobA | - |
| JLF31_RS14305 | 2934083..2934313 | + | 231 | WP_013096102.1 | DNA polymerase III subunit theta | - |
| JLF31_RS14310 | 2934424..2935074 | + | 651 | WP_058690984.1 | carbon-nitrogen hydrolase family protein | - |
| JLF31_RS14315 | 2935099..2935761 | + | 663 | WP_014884303.1 | exodeoxyribonuclease X | - |
Associated MGEs
| MGE detail |
Similar MGEs |
Relative position |
MGE Type | Cargo ARG | Virulence gene | Coordinates | Length (bp) |
|---|---|---|---|---|---|---|---|
| - | flank | IS/Tn | - | - | 2928830..2929810 | 980 |
Relative position:
(1) inside: TA loci is completely located inside the MGE;
(2) overlap: TA loci is partially overlapped with the MGE;
(3) flank: The TA loci is located in the 5 kb flanking regions of MGE.
Sequences
Toxin
Download Length: 104 bp
>T35656 NZ_AP022446:c2932209-2932106 [Enterobacter kobei]
GGCAAGGCGACTTAGCCTGCATTAATGCCAACTTTTAGCGCACGGCTCTCTCCCAAGAGCCATTTCCCTGGACCGAATAC
AGGAATCGTATTCGGTCTCTTTTT
GGCAAGGCGACTTAGCCTGCATTAATGCCAACTTTTAGCGCACGGCTCTCTCCCAAGAGCCATTTCCCTGGACCGAATAC
AGGAATCGTATTCGGTCTCTTTTT
Antitoxin
Download Length: 145 bp
>AT35656 NZ_AP022446:2932100-2932244 [Enterobacter kobei]
ACAGATAAAAAGAGACCGAATACGATTCCTGTATTCGGTCCAGGGAAATGGCTCTTGGGAGAGAGCCGTGCGCTAAAAGT
TGGCATTAATGCAGGCTAAGTCGCCTTGCCTTTTAAGAATAGATGACGACGCCAGGTTTTCCAGT
ACAGATAAAAAGAGACCGAATACGATTCCTGTATTCGGTCCAGGGAAATGGCTCTTGGGAGAGAGCCGTGCGCTAAAAGT
TGGCATTAATGCAGGCTAAGTCGCCTTGCCTTTTAAGAATAGATGACGACGCCAGGTTTTCCAGT
